Biochar effects on soil biota – A review

Biochar has gained interest as a soil amendment to improve soil quality and as means to help mitigate climate change. With the recent focus given to the soil as a living system and the essential functions it provides, knowledge of different effects of biochar on the microbial community is critical. A laboratory incubation (120 d) study was conducted on a Bennington silt loam (fine, illitic, mesic Aeric Epiaqualf) amended with corn (Zea mays L.) and hardwood biochars produced under slow pyrolysis. Biochars were analyzed for their chemical and physical properties and were added to the soil on a C content basis without exceeding 2.5% w/w. Microbial community abundance and composition were evaluated by phospholipid fatty acids (PLFA) analysis, and potential enzyme activities by β‐glucosidase, and fluorescein diacetate (FDA) hydrolysis. There were no significant differences in the abundance of saprophytic fungi or bacteria in samples incubated with biochars when compared to the control. However, soils incubated with corn biochar had significantly (P < .05) higher abundance of Actinobacteria markers than hardwood biochar. The FDA hydrolysis did not show significant differences between soils incubated with biochar when compared with the control. Conversely, the β‐glucosidase activity was significantly higher (P < .05) in soils incubated with either biochar than in control. Since biochar can influence changes in microbial community composition and enzyme activity it may influence cellulose degradation and soil organic matter dynamics in the agricultural soil evaluated.

Plant removal disturbance and replant mitigation effects on the abundance and diversity of low-arctic soil biota

Soil amendment with biochar is evaluated globally as a means to improve soil fertility, restoration of the ecological functions for anthropogenically polluted soils and also is a potential candidate to mitigate climate change. Application of biochar, a carbon-rich material developed from the combustion of biomass under no or limited oxygen supply has been found to ameliorate some of the negative effects of soil. Biochar modifications can lead to an increase in the water holding capacity as well as pH modification may also be used as a soil amendment. There are various other physical, chemical, and biological properties of biochar that can impact soils. However, the effects of biochar on soil biota have received much less attention than its effects on soil chemical properties. This review highlights essentially the various methods of preparation of biochar from waste biomasses and its usage as a potential soil amendment agent with a special emphasis on the effect of biochar on soil microbiology. A well-accepted mechanism of the effect of biochar on soil microbe environment still needs more focus. Therefore, the current review will further help in understanding the feasibility, safety, and effectiveness of biochar utilization for improving the fertility of the soil. RESEARCH HIGHLIGHTS This paper presents a detailed review of the biochar utilization as soil amendment describing the various methods of biochar preparation, its modification, usage for soil improvement, etc. A constructive review of the impact of biochar on soil microbiology has also been presented in the paper.

Straw and biochar, two commonly used soil amendments, have been shown to enhance soil fertility and the composition of microbial communities. To compare the effects of straw and biochar on soil fertility, particularly focusing on soil dissolved organic matter (DOM) components, and the physiochemical properties of soil and microbial communities, a combination of high-throughput sequencing and three-dimensional fluorescence mapping technology was employed. In our study, we set up four treatments, i.e., without biochar and straw (B0S0); biochar only (B1S0); straw returning only (B0S1); and biochar and straw (B1S1). Our results demonstrate that soil organic matter (SOM), available nitrogen (AN), and available potassium (AK) were increased by 34.71%, 22.96%, and 61.68%, respectively, under the B1S1 treatment compared to the B0S0 treatment. In addition, microbial carbon (MBC), dissolved organic carbon (DOC), and particulate organic carbon (POC) were significantly increased with the B1S1 treatment, by 55.13%, 15.59%, and 125.46%, respectively. The results also show an enhancement in microbial diversity, the composition of microbial communities, and the degree of soil humification with the application of biochar and straw. Moreover, by comparing the differences in soil fertility, DOM components, and other indicators under different treatments, the combined treatments of biochar and straw had a more significant positive impact on paddy soil fertility compared to biochar. In conclusion, our study revealed the combination of straw incorporation and biochar application has significant impacts and is considered an effective approach to improving soil fertility.

Biochar application to arable soils could be effective for soil C sequestration and mitigation of greenhouse gas (GHG) emissions. Soil microorganisms and fauna are the major contributors to GHG emissions from soil, but their interactions with biochar are poorly understood. We investigated the effects of biochar and its interaction with earthworms on soil microbial activity, abundance, and community composition in an incubation experiment with an arable soil with and without N-rich litter addition. After 37 days of incubation, biochar significantly reduced CO2 (up to 43 %) and N2O (up to 42 %), as well as NH4 +-N and NO3 −-N concentrations, compared to the control soils. Concurrently, in the treatments with litter, biochar increased microbial biomass and the soil microbial community composition shifted to higher fungal-to-bacterial ratios. Without litter, all microbial groups were positively affected by biochar × earthworm interactions suggesting better living conditions for soil microorganisms in biochar-containing cast aggregates after the earthworm gut passage. However, assimilation of biochar-C by earthworms was negligible, indicating no direct benefit for the earthworms from biochar uptake. Biochar strongly reduced the metabolic quotient qCO2 and suppressed the degradation of native SOC, resulting in large negative priming effects (up to 68 %). We conclude that the biochar amendment altered microbial activity, abundance, and community composition, inducing a more efficient microbial community with reduced emissions of CO2 and N2O. Earthworms affected soil microorganisms only in the presence of biochar, highlighting the need for further research on the interactions of biochar with soil fauna.

Microbial nutrient limitation was investigated in a 53-year-old field experiment in the Central-West of Burkina Faso under sorghum–cowpea rotation, comparing three fertilization practices: mineral fertilizer (MIN), mineral fertilizer and farmyard manure (MINFYM), and a non-fertilized control (CON). We assessed microbial N and P limitation after removal of C limitation by (i) determining microbial N and P, (ii) assessing respiration kinetics in incubated soil samples amended with easily available C (glucose) alone or in combination with N and/or P, or not amended, and (iii) evaluating changes in microbial biomass and community composition at the peak of microbial respiration by microbial P and phospholipid fatty acid (PLFA) analyses. Microbial N and P were very low in all fertilization practices, but greater in MINFYM than in CON. Easily available C was the first factor limiting microorganisms in all fertilization practices. After removal of C limitation, most indicators suggested N and P co-limitation in CON. In contrast, respiration kinetics in MINFYM and MIN were only N-limited, while biomass formation in MINFYM was also P-limited. PLFA analyses indicated preferential fungal growth on the added C, and P limitation of changes in microbial community composition in MIN. Long-term application of fertilizers mostly alleviated secondary microbial nutrient limitation by P but not by N, and C always remained the primary limiting factor for microbial growth.

The microbial community composition changes rapidly in the early stages of decomposition of wheat residue

Animals are a critical component of biogeochemical cycles. While animal mediated fluxes of nutrients and energy have received considerable attention, the impacts of these fluxes on microbial community structure and function are comparatively understudied. Here, we investigated if freshwater mussel influences on biogeochemical cycling in stream sediment are accompanied by changes in sediment microbial community composition and ecoenzymatic activity, and if these relationships change under different nutrient regimes. We predicted that mussel effects on ecosystem function are reflected by modified sediment microbial communities. We hypothesized that if changes in either sediment ecoenzymatic function or microbial community composition are driven by mussel‐derived nutrient amendments, we should see muted changes in microbial community assemblages or function when a given nutrient is abundant. However, if microbial communities and function are influenced by other mussel functions, then we should see uniform changes regardless of nutrient availability. We transplanted freshwater mussels and natural river sediment to flow‐through mesocosms and monitored changes in microbial community composition over 1 week. Our results indicate that mussels always changed sediment microbial community composition, but the way communities changed was dependent on ambient nutrient concentrations. On the final day we measured the activity of ecoenzymes known to correlate to microbial function and nutrient availability. Mussels homogenized the stoichiometric ratios of ecoenzyme activities, indicating a consistent function of sediment microbes associated with freshwater mussels. Our results suggest that mussels may promote functional redundancy in sediment microbial communities and highlight the importance of animals in controlling biogeochemical transformations under changing nutrient conditions. Read the free Plain Language Summary for this article on the Journal blog.

Accumulation of microplastics (MPs) in agricultural environments has caused growing concern in recent years because of its detrimental impacts on soil quality, crop productivity and ecosystem function. This study was conducted to assess the impact of biochar on soil chemical and microbial properties in a MP‐contaminated soil under two moisture regimes. Soil was contaminated with 1% (w/w) of low‐density polyethylene MPs. Four types of standard biochar, that is, oil seed rape (OSR) biochar produced at 550°C (OSR 550) and 700°C (OSR 700) and soft wood pellet (SWP) biochar produced at 550°C (SWP 550) and 700°C (SWP 700), were applied at a rate of 5% (w/w). The control was maintained without MP addition. The samples were incubated in soil with two moisture regimes, that is, at 30% and 70% of the water holding capacity, and the soil chemical and microbiological properties were assessed after 100 days of incubation. OSR biochar application significantly increased soil pH (8.53–8.81) and electrical conductivity (0.51–0.58 dS/m) in both moisture regimes. The effect of biochar application on soil enzyme activity and microbial community composition did not show a clear trend. However, SWP 700 biochar improved soil enzyme activity compared with that of the control and improved bacterial diversity and evenness compared with those of other biochars, which was attributed to the high surface area available for microbial colonization. Low soil moisture content significantly reduced enzyme activity and bacterial richness even with biochar amendment, except for SWP 550 biochar. This study implies the suitability of biochar for improvement of soil quality in MP contaminated soil under both moisture regimes. However, further long‐term studies are needed to get a clear understanding on the impact of different types of biochar on MP‐contaminated soil.

Soil microbial communities are closely associated with aboveground plant communities, with multiple potential drivers of this relationship. Plants can affect available soil carbon, temperature, and water content, which each have the potential to affect microbial community composition and function. These same variables change seasonally, and thus plant control on microbial community composition may be modulated or overshadowed by annual climatic patterns. We examined microbial community composition, C cycling processes, and environmental data in California annual grassland soils from beneath oak canopies and in open grassland areas to distinguish factors controlling microbial community composition and function seasonally and in association with the two plant overstory communities. Every 3 months for up to 2 years, we monitored microbial community composition using phospholipid fatty acid (PLFA) analysis, microbial biomass, respiration rates, microbial enzyme activities, and the activity of microbial groups using isotope labeling of PLFA biomarkers (13C-PLFA). Distinct microbial communities were associated with oak canopy soils and open grassland soils and microbial communities displayed seasonal patterns from year to year. The effects of plant species and seasonal climate on microbial community composition were similar in magnitude. In this Mediterranean ecosystem, plant control of microbial community composition was primarily due to effects on soil water content, whereas the changes in microbial community composition seasonally appeared to be due, in large part, to soil temperature. Available soil carbon was not a significant control on microbial community composition. Microbial community composition (PLFA) and 13C-PLFA ordination values were strongly related to intra-annual variability in soil enzyme activities and soil respiration, but microbial biomass was not. In this Mediterranean climate, soil microclimate appeared to be the master variable controlling microbial community composition and function.

Microbial communities are known to be sensitive indicators for water pollution and biomonitoring assessment. In this study, we aimed at observation of microbial abundance and community composition in the mountain river Morávka. The results showed temporal and spatial changes in total cell abundance (TCA). TCA reached 105–106 cells/ml, increasing values were detected towards the mouth with maxima in summer and autumn months. Out of Eubacteria Betaproteobacteria and Cytophaga-Flavobacterium were found to predominate, while Archaea represented only 4.8 % of TCA. Along the flow three distinct patterns of phylogenetic groups' share were revealed related to increasing pollution. Microbial community composition was found to be most significantly dependent on the elevation and the sampling date. Moreover, environmental variables like O2 saturation, water temperature, trophic potential and pH influenced microbial community as well. Statistical analyses showed significant seasonal (23.5 %) and spatial (4.7 %) changes in microbial community composition.

To investigate the retention and removal of the fish pathogenic bacterium Yersinia ruckeri in biological sand filters and effects on the microbial community composition. Sand filter columns were loaded (70 mm day(-1)) with fish farm wastewater and a suspension (10(8) CFU ml(-1)) of Y. ruckeri. Bacterial numbers and protozoan numbers were determined by plate counts and epifluorescence microscopy, respectively, and microbial biomass and community composition were assessed by phospholipid fatty acids (PLFA) analysis. Concentrations of Y. ruckeri in the filter effluent decreased from 10(8) to 10(3)-10(5) CFU ml(-1) during the experiment. Numbers of Y. ruckeri in the sand decreased from 10(6) CFU g(-1) dry weight (DW) sand to 10(4) CFU g(-1) DW sand. In contrast, microbial biomass determined with plate counts and total PLFA increased during the whole experiment. Principal component analysis (PCA) revealed a change in microbial community composition with time, with the most pronounced change in surface layers and towards the end of the experiment. Protozoan numbers increased from ca 0-600 cells g(-1) DW sand, indicating the establishment of a moderate population of bacterial grazers. The removal of Y. ruckeri improved during the experiment. Introduction of Y. ruckeri to the sand filter columns stimulated growth of other micro-organisms, which in turn caused a shift in the microbial community composition in the sand. This study increases the understanding of the dynamics of sand filters subjected to a high loading of a pathogenic bacterium and can therefore be used in future work were the overall aim is to provide a more reliable and efficient removal of pathogenic bacteria in biological sand filter systems.

Tomato root soil quality and microbial community composition are important for improving fruit quality. However, the effect of biochar and soil amendment on tomato fruit quality and root soil characteristics under greenhouse production has been insufficiently explored. In this study, the fruit quality and bacterial communities in tomato root soil and fruit subjected to biochar and soil amendment were analyzed using Illumina sequencing. The results showed that the application of biochar and soil amendment increased the available phosphorous in tomato greenhouse soils, ranging from 49.37 to 52.02 mg kg−1. Biochar greatly affected the fruit quality, such as the lutein content (1.55 μg g−1). The potassium content in the fruits was higher than that of nitrogen and phosphorous, reaching 1.59 g kg−1. The addition of biochar and soil amendment promoted the abundance of Bacteroidota, Actinobacteriota, and Firmicutes at the phylum level in the tomato fruits. However, biochar and soil amendment slightly reduced the number of Proteobacteria in the fruits. This study provides new insights into practical strategies for promoting tomato fruit quality and soil condition.

Drought-induced and seasonal variation in carbon use efficiency is associated with fungi:bacteria ratio and enzyme production in a grassland ecosystem

Soil fauna is an important part of global biodiversity and plays a vital role in ecosystems. The microbial communities in soil fauna can have significant impacts on soil fertility, as microbial communities play a pivotal role in soil function by supporting ecological integrity and agricultural productivity. This study assesses the effect of biochar on soil fauna and response of microbial communities. Biochar is a highly porous organic carbon material, and the impact of biochar on microbial communities in soil fauna remains unclear. To date, no quantitative or comprehensive investigation has been undertaken to examine the effects of biochar on microbial communities in soil fauna. In this paper, we aim to quantify the effects of biochar on the abundance and diversity of soil fauna communities in various environments by conducting a meta‐analysis of 24 studies and analysing 459 observations. The impact of biochar on soil fauna communities was determined by analysing the responses of soil fauna that included differences in biochar feedstock, pH and pyrolysis, application rates and application times, as well as soil fauna with different physiological characteristics (body size, presence of exoskeletons). The results showed that biochar had a neutral (non‐significant) effect on the soil fauna community, with a total mean effect size (Hedge's g ) = −0.04 (CI: −0.28; −0.20). Results Data validation using Egger regression showed no publication bias. Higher pH biochar and biochar from conventional pyrolysis were beneficial to soil fauna, but not significant (QM (df = 3) = 4.07, p = .25). In addition, body size of soil animals significantly reflected different sensitivities to biochar application, with Medium‐sized animals benefiting the most from biochar addition (0.35; CI: 0.05; 0.65; n = 6; 56). Animals with ( n = 11; 125) and without exoskeletons ( n = 17; 308) also showed favourable and unfavourable responses to biochar addition, respectively. This study can provide basic data for the evolutionary pattern of animal communities during biochar soil amendment, as well as information for the comprehensive evaluation of the environmental and biological effects of biochar.