Abstract

Phenolic acids and natural extracts, as ecofriendly environmental agents, can be used as bio bactericides against the growth of plant pathogenic bacteria. In this study, isolation trails from infected potato tubers and stems that showed soft rot symptoms in fields revealed two soft rot bacterial isolates and were initially identified through morphological, physiological, and pathogenicity tests. The molecular characterization of these isolates via PCR, based on the 16S rRNA region, was carried out by an analysis of the DNA sequence via BLAST and Genbank, and showed that the soft rot bacterial isolates belong to Pectobacterium carotovorum subsp. carotovorum (PCC1) and Dickeya solani (Ds1). The in vitro results of the tested phenolic acids against the cultured bacterial isolates proved that concentrations of 800, 1600, and 3200 μg/mL were the most effective. Ferulic acid was the potent suppressive phenolic acid tested against the Ds1 isolate, with an inhibition zone ranging from 6.00 to 25.75 mm at different concentrations (25–3200 μg/mL), but had no effect until reaching a concentration of 100 μg/mL in the PCC1 isolate, followed by tannic acid, which ranged from 7.00 to 25.50 mm. On the other hand, tannic acid resulted in a significant decrease in the growth rate of the PCC1 isolate with a mean of 9.11 mm. Chlorogenic acid was not as effective as the rest of the phenolic acids compared with the control. The n-hexane oily extract (HeOE) from Bougainvillea spectabilis bark showed the highest activity against PCC1 and Ds1, with inhibition zone values of 12 and 12.33 mm, respectively, at a concentration of 4000 μg/mL; while the HeOE from Citharexylum spinosum wood showed less activity. In the GC/MS analysis, nonanal, an oily liquid compound, was found ata percentage of 38.28%, followed by cis-2-nonenal (9.75%), which are the main compounds in B. spectabilis bark HeOE, and 2-undecenal (22.39%), trans-2-decenal (18.74%), and oleic acid (10.85%) were found, which are the main compounds in C. spinosum wood HeOE. In conclusion, the phenolic acids and plant HeOEs seem to raise the resistance of potato plants, improving their defense mechanisms against soft rot bacterial pathogens.

Highlights

  • Potato (Solanum tubersum L.) is the world’s fourth most consumed crop, with an estimated374 million tons of production worldwide, obtained from nearly 17,623,660 hectares [1]

  • The objectives of the present study were to isolate and identify potato soft rot bacteria through classical and molecular tests, in order to determine the sensitivity of soft rot bacteria Pectobacterium carotovorum subsp. carotovorum (PCC1) and Dickeya solani (Ds1) toward some phenolic acids and plant extracts from B. spectabilis bark and C. spinosum wood

  • The morphological and biochemical characteristics tests were applied on the obtained soft rot bacterial isolates, and included cell shape, Gram staining, motility, anaerobic growth, growth at 36 ◦ C, gelatin liquefaction, indole formation, nitrate reduction, hydrolysis of starch, lipolytic activity, mucoid growth, H2 S production from cysteine, reducing substance from sucrose, acetoin production, urease production, oxidase, growth in 5% NaCl, and sensitivity to the antibiotic erythromycin [40]

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Summary

Introduction

374 million tons of production worldwide, obtained from nearly 17,623,660 hectares [1]. Potato is rated as one of Egypt’s most significant vegetable crops, with a production total of 4,325,478 tons from around 163,939 hectares, making Egypt the second largest potato producer after Algeria. The main reasons for soft rot and blackleg disease in potatoes in warmer climates are Pectobacterium carotovorum subsp. Carotovorum and P. atrosepticum [2,3], whereas, in Brazil and South Africa, the main causative agent for blackleg disease is P. carotovorum subsp. Erwinia chrysanthemi was recognized as a causative agent of potato stem rot disease—recently reclassified as Dickeya spp. In Egypt, the main agents causing soft rot and blackleg disease are P. atrosepticum, P. carotovorum subsp. Potatoes with soft rot cause massive losses of over 40% to 80% as a result of weather factors [13,14]

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