Benthic invertebrate biodiversity enhancement with reef cubes®, evidenced by environmental DNA analysis of sediment samples

Abstract

Nature inclusive design (NID) is an “eco-friendly” approach to the construction of manmade infrastructure. reef cubes® are patented construction products designed to be used as NID options for marine developments. Artificial reefs can be made with reef cubes® when used either as replacements of or additions to conventional marine manmade structures in marine construction projects. The first long-term, marine research station with reef cubes® is in Torbay, Devon, UK. A goal of the installation, to enhance biodiversity, is assessed here in regards to the benthic invertebrate community, with a novel method of sedimentary environmental DNA (eDNA) analysis. There are two primary aims targeted in this study: firstly to use sedimentary eDNA metabarcoding to assess if the enhancement of invertebrate biodiversity has been achieved and secondly to assess if the reef cubes have a negative impact on the infaunal diversity of exposed sediments in their vicinity. Sediment samples were taken in and away from, the reef cube® test site, in periods before and after their installation. Genetic material in the samples was amplified, sequenced, and amplicon sequence variants (ASVs) assigned to taxonomic ranks. Invertebrate metazoan biodiversity was analysed in terms of taxonomic richness, taxonomic diversity, genetic diversity of ASVs per taxa and species richness of: orders, functional feeding groups and positional lifestyle groups (infauna, epifauna or plankton). A significantly higher biodiversity of invertebrates was found at the reef sites across all measures. Benthic epifauna, suspension feeders and carnivore taxa in particular exhibited higher diversity. Mussels, barnacles, anemones, hydrozoans and copepods were the most distinguishing taxa. Benthic infauna were similarly diverse inside and around the reef cubes® to surrounding sediments. The results suggest that at least for the reef cubes® sampled here the goal of enhancing invertebrate biodiversity at the test site has been achieved. There was no negative effect found on the infaunal diversity in exposed sediments inside and beside the reef cubes®. Application of eDNA analyses to sediment samples represents a promising and efficient method for assessing such ecological goals with the installation of NIDs and artificial reefs.