Abstract

In this work, computer simulation has been carried out, and the molecular parameters of oxygen and a superoxide ion have been calculated to select the most optimal basis set of functions for further quantum mechanical calculations that include the presence of reactive oxygen species. For each particle, the equilibrium bond lengths and averaged polarizabilities in a continuous dielectric aqueous medium are obtained with the Conductor-like Polarizable Continuum Model (CPCM) and Solvation Model based on Density (SMD). Calculations for the 16 basic sets are conducted using the Orca software package. The obtained numerical values are compared with experimental data. The electron affinity energy of the oxygen molecule is used as the main selection criterion. The total time of computer calculations for each basis set is considered, and the most optimal basis sets are selected. The basis sets 6-31+G(d), 6-311+G, def2-TZVPD, and aug-cc-pVDZ are recommended for numerical calculations of molecular systems incorporating molecular oxygen and superoxide radical as its reduction product.

Highlights

  • Computer simulation has been carried out, and the molecular parameters of oxygen and a superoxide ion have been calculated to select the most optimal basis set of functions for further quantum mechanical calculations that include the presence of reactive oxygen species

  • The equilibrium bond lengths and averaged polarizabilities in a continuous dielectric aqueous medium are obtained with the Conductor-like Polarizable Continuum Model (CPCM) and Solvation Model based on Density (SMD)

  • The electron affinity energy of the oxygen molecule is used as the main selection criterion

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Summary

Introduction

Computer simulation has been carried out, and the molecular parameters of oxygen and a superoxide ion have been calculated to select the most optimal basis set of functions for further quantum mechanical calculations that include the presence of reactive oxygen species. The basis sets 6-31+G(d), 6-311+G, def2-TZVPD, and aug-cc-pVDZ are recommended for numerical calculations of molecular systems incorporating molecular oxygen and superoxide radical as its reduction product. Для выполнения этой задачи прежде всего необходимо изучить электронные свойства кислорода и супероксид-иона. Поскольку биологические реакции с участием кислорода происходят в водно-белковой среде, а не в вакууме, то важно оценить влияние растворителя на электронные характеристики этих молекул.

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