Abstract

Pathogenic bacteria secrete a variety of proteins that manipulate host cell function by targeting components of the plasma membrane, cytosol, or organelles. In the last decade, several studies identified bacterial factors acting within the nucleus on gene expression or other nuclear processes, which has led to the emergence of a new family of effectors called “nucleomodulins”. In human and animal pathogens, Listeria monocytogenes for Gram-positive bacteria and Anaplasma phagocytophilum, Ehrlichia chaffeensis, Chlamydia trachomatis, Legionella pneumophila, Shigella flexneri, and Escherichia coli for Gram-negative bacteria, have led to pioneering discoveries. In this review, we present these paradigms and detail various mechanisms and core elements (e.g., DNA, histones, epigenetic regulators, transcription or splicing factors, signaling proteins) targeted by nucleomodulins. We particularly focus on nucleomodulins interacting with epifactors, such as LntA of Listeria and ankyrin repeat- or tandem repeat-containing effectors of Rickettsiales, and nucleomodulins from various bacterial species acting as post-translational modification enzymes. The study of bacterial nucleomodulins not only generates important knowledge about the control of host responses by microbes but also creates new tools to decipher the dynamic regulations that occur in the nucleus. This research also has potential applications in the field of biotechnology. Finally, this raises questions about the epigenetic effects of infectious diseases.

Highlights

  • Pathogenic or symbiotic bacteria exploit the functions of eukaryotic cells using surface proteins or proteins secreted by general secretion systems or specialized apparatus (Sec, Tat, Type 1 (T1SS) to Type9 (T9SS) secretion systems, reviewed in [1,2,3])

  • Ankyrin A (AnkA) binds to AT-rich DNA motifs and recruits HDAC1 at the CYBB promoter, binds to Alu-Sx DNA motifs, while TRP32, TRP47, and TRP120 bind to G-rich or G + C-rich DNA

  • In L. pneumophila, the AnkH effector has recently been shown to interact with the host nuclear protein LARP7, which is a component of the 7SK small nuclear ribonucleoprotein complex

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Summary

Introduction

Pathogenic or symbiotic bacteria exploit the functions of eukaryotic cells using surface proteins or proteins secreted by general secretion systems or specialized apparatus (Sec, Tat, Type 1 (T1SS) to Type. In Gram-negative bacteria, the study of Type 3 and Type 4 secretion system (T3SS and T4SS) effectors revealed nucleomodulins with various modes of action, acting either on chromatin or on its regulators. From these data, Bierne and Cossart proposed to group all bacterial factors targeting the nucleus into one family, the nucleomodulins [9]. Since 2012, the number of nucleomodulins has continued to increase, illustrating an incredible sophistication in the mechanisms used by bacteria to act on nuclear factors in the host cell, facilitating infection or bacterial colonization [11,12].

Nuclear
Nucleomodulins of Listeria monocytogenes
Ankyrin Repeat- and Tandem Repeat-Containing Nucleomodulins
Nucleomodulins Acting as Chromatin-Modification Enzymes
Nucleomodulins Triggering PTM on Nuclear Regulators
Nucleomodulins Acting as Proteases
Ever More Substrates and Functions
Regulation of Nucleomodulins by PTMs
10. Conclusions
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