Attenuated Total Reflectance–Fourier Transform Infrared (ATR-FTIR) Spectroscopy Combined With Deep Learning for Classification of Idiopathic Recurrent Spontaneous Miscarriage (IRSM)

Abstract

Idiopathic recurrent spontaneous miscarriage (IRSM) is characterized by the repeated losses of two or more clinically detected pregnancies before 24 week of gestation with the cause remaining unknown. We aim to ascertain whether attenuated total reflectance-Fourier transform infrared (ATR-FTIR) spectroscopy with deep learning (DL) can accurately distinguish IRSM from controls. Endometrial tissue (internal lining of the uterine cavity) was collected from 20 women with IRSM and 20 controls during window of implantation. ATR-FTIR spectroscopy was used to acquire spectra (400–4000 cm−1) from three random locations across each specimen and averaged. Multivariate analysis was used to assess group differentiation. Furthermore, DL classifiers were implemented to predict IRSM. Hierarchical cluster analysis (HCA) demonstrated distinct clustering of the two groups. The principal component analysis (PCA) loading plot indicated contributions from amide I, II and III bands, symmetric methyl (CH3) bending of proteins, lipids, nucleic acids, asymmetric stretching of CH2 due to lipids, collagen, and glucose in discriminating between IRSM and controls. Supervised orthogonal projections to latent structures discriminant analysis (OPLS-DA) exhibited optimized discrimination between the groups. Convolutional neural network (CNN) and variational autoencoder-artificial neural network (VAE-ANN) classifiers exhibited good performance and showed classification accuracy of 94% and 94% and F1 scores (mean of recall and precision) of 95% and 93%, respectively. The optimal area under the receiver operating characteristic curve (AUC) value of both CNN and VAE-ANN was 0.94. ATR-FTIR spectroscopy combined with DL approach is promising for understanding complex disease pathophysiology and enabling early prediction.