Assessment of pollution impact on aquatic microbial communities based on DNA hybridization and protozoan identification: preliminary method development and comparison

Abstract

Common methods of assessing the biological impact of point source discharge involve a census of organisms above and below the discharge. The identification and enumeration of organisms necessary for this approach can be time consuming and costly. When microbial communities are used, identification and enumeration are often impossible because the majority of species are identifiable only when cultured and most native species cannot be cultured. As such, little is known about the response of nonculturable aquatic microbial communities to anthropogenic changes. We isolated aquatic microbial DNA from colonized artificial substrates in two streams receiving industrial waste. DNA was isolated from the microbial communities upstream and downstream of the discharges and the similarity of these communities were compared by DNA-DNA hybridization. These novel estimates of impact were compared to more conventional estimates based on a component of the microbial communities that could be readily identified, the protozoans. Protozoan species were identified and similarity between upstream and downstream stations was assessed using Jaccard's similarity index.