Abstract
Mutations in members of the SWI/SNF chromatin remodeling family are common events in cancer, but the mechanisms whereby disruption of SWI/SNF components alters tumorigenesis remain poorly understood. To model the effect of loss of function mutations in the SWI/SNF subunit Arid1a in pancreatic ductal adenocarcinoma (PDAC) initiation, we directed shRNA triggered, inducible and reversible suppression of Arid1a to the mouse pancreas in the setting of oncogenic KrasG12D. Arid1a cooperates with Kras in the adult pancreas as postnatal silencing of Arid1a following sustained KrasG12D expression induces rapid and irreversible reprogramming of acinar cells into mucinous PDAC precursor lesions. In contrast, Arid1a silencing during embryogenesis, concurrent with KrasG12D activation, leads to retention of acinar cell fate. Together, our results demonstrate Arid1a as a critical modulator of Kras-dependent changes in acinar cell identity, and underscore an unanticipated influence of timing and genetic context on the effects of SWI/SNF complex alterations in epithelial tumorigenesis.
Highlights
Aberrant chromatin regulation is a hallmark of cancer (Flavahan et al, 2017)
We used a previously developed mouse model of KrasG12D-induced pancreatic tumorigenesis that integrates robust and inducible RNA interference (RNAi) technology with embryonic stem (ES) cell genetic engineering (Saborowski et al, 2014). This model, referred to below as KC-RIK (Figure 1A), incorporates a Ptf1a-Cre that activates Cre-driven alleles in the pancreas (Hingorani et al, 2003), LSL-KrasG12D (Jackson et al, 2001), as well as a set of alleles that allow for doxycycline-regulatable shRNA expression: CAGS-LSL-rtTA3-IRES-mKate2 (CAGS-LSL-RIK), which enables Cre-activatable expression of a reverse tetracycline transactivator; a red fluorescent reporter (Dow et al, 2014); and a Col1a1 homing cassette that enables insertion of a single copy of a construct into the Col1a1 locus via recombinase-mediated cassette exchange (RMCE) (Beard et al, 2006)
We found that knockdown of Arid1a resulted in striking changes in chromatin accessibility, with shArid1a chromatin profiles that clearly separated from shRen by PCA (Figure 7A,B). 50,000–60,000 dynamic peaks were observed, virtually all of which were reduced in the shArid1a samples relative to the shRen controls (Figure 7B,C)
Summary
Aberrant chromatin regulation is a hallmark of cancer (Flavahan et al, 2017). Numerous studies have revealed an abnormal chromatin state in tumor cells in comparison with their tissue of origin, and mutations in genes encoding chromatin readers, writers and remodelers have been detected across the spectrum of human cancers (Feinberg et al, 2016). Traditional gene ‘knockout’ models do not allow for the restoration of the endogenous protein, making it difficult to address questions of phenotypic reversibility and the requirement for sustained gene loss in disease maintenance Addressing these issues, we implement a powerful mouse-modeling platform that enables inducible and reversible disruption of gene function to show that Arid1a depletion can modulate the early stages of pancreatic neoplasia in a context-specific manner that depends on the timing of Arid1a inactivation and the presence of oncogenic Kras. These cell state transitions facilitated by Arid1a perturbation involve reprogramming events that, in contrast to tissue regenerative responses, are irreversible
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