Abstract
BackgroundApricot is cultivated worldwide because of its high nutritive content and strong adaptability. Its flesh is delicious and has a unique and pleasant aroma. Apricot kernel is also consumed as nuts. The genome of apricot has been sequenced, and the transcriptome, resequencing, and phenotype data have been increasely generated. However, with the emergence of new information, the data are expected to integrate, and disseminate.ResultsTo better manage the continuous addition of new data and increase convenience, we constructed the apricot genomic and phenotypic database (AprGPD, http://apricotgpd.com). At present, AprGPD contains three reference genomes, 1692 germplasms, 306 genome resequencing data, 90 RNA sequencing data. A set of user-friendly query, analysis, and visualization tools have been implemented in AprGPD. We have also performed a detailed analysis of 59 transcription factor families for the three genomes of apricot.ConclusionSix modules are displayed in AprGPD, including species, germplasm, genome, variation, product, tools. The data integrated by AprGPD will be helpful for the molecular breeding of apricot.
Highlights
ResultsTo better manage the continuous addition of new data and increase convenience, we constructed the apri‐ cot genomic and phenotypic database (AprGPD, http://apricotgpd.com)
Apricot is cultivated worldwide because of its high nutritive content and strong adaptability
A total of ten species belongs to the Armeniaca section, among these species, nine species, including Prunus armeniaca, P. sibirica, P. mandshurica, P. holosericeae, Prunus × dasycarpa, P. zhidanensis, P. zhengheeniss, P. limeixing, and P. mume, are native to China [3,4,5], whereas, P. brigantina is endemic in French Alps [6]
Summary
To better manage the continuous addition of new data and increase convenience, we constructed the apri‐ cot genomic and phenotypic database (AprGPD, http://apricotgpd.com). AprGPD contains three reference genomes, 1692 germplasms, 306 genome resequencing data, 90 RNA sequencing data. A set of user-friendly query, analysis, and visualization tools have been implemented in AprGPD. We have performed a detailed analysis of 59 transcription factor families for the three genomes of apricot
Sign-in/Register to view highlights & summary Sign-in/Register to access full text options 
Talk to us
Join us for a 30 min session where you can share your feedback and ask us any queries you have
Schedule a callDisclaimer: All third-party content on this website/platform is and will remain the property of their respective owners and is provided on "as is" basis without any warranties, express or implied. Use of third-party content does not indicate any affiliation, sponsorship with or endorsement by them. Any references to third-party content is to identify the corresponding services and shall be considered fair use under The CopyrightLaw.
