Application of the profiles of amino acid utilization as the sole carbon and nitrogen sources for pseudomonad taxonomy

Abstract

Profiles of utilization of 20 amino acids were determined for 218 strains of 10 Pseudomonas species (P. aeruginosa, P. putida, P. fluorescens, P. stutzeri, P. alcaligenes, P. pseudoalcaligenes, P. luteola, P. oryzihabitans, P. mendocina, and P. chlororaphis), including the type strains of these species. Amino acid utilization was determined on minimal salt agar with an amino acid as the sole source of nitrogen and carbon. All the investigated pseudomonad species had species-specific profiles of amino acid utilization. For the type strains of all species, Jaccard’s coefficients of community were different (Sj = 0.31–0.82), in accordance with the interspecies differences. The similarity between the intraspecies variants of the profiles and that of the type strain was high; for 98% of P. aeruginosa strains, Sj = 0.85−1.0; for 100% of P. putida, P. stutzeri, and P. alcaligenes strains, Sj was 0.87–1.0, 0.90, and 0.86–1.0, respectively. Only for P. fluorescens and P. pseudoalcaligenes were low Sj of the intraspecies profiles revealed, in accordance with the known phenotypic heterogeneity of these species. These results agree with the known pseudomonad classification, and the method is therefore valid for identification of known species and for determination of the new members of the genus Pseudomonas.