Abstract

Autophagy is a degradative process in which cytoplasmic components are non-selectively sequestered by double-membrane structures, termed autophagosomes, and transported to the vacuole. We have identified and characterized a novel protein Apg2p essential for autophagy in yeast. Biochemical and fluorescence microscopic analyses indicate that Apg2p functions at the step of autophagosome formation. Apg2p localizes to some membranous structure distinct from any known organelle. Using fluorescent protein-tagged Apg2p, we showed that Apg2p localizes to a dot structure close to the vacuole, where Apg8p also exists, but not on autophagosomes unlike Apg8p. This punctate localization of Apg2p depends on the function of Apg1p kinase, phosphatidylinositol 3-kinase complex and Apg9p. Apg2p(G83E), encoded by an apg2-2 allele, shows a severely reduced activity of autophagy and a dispersed localization in the cytoplasm. Overexpression of the mutant Apg2p lessens the defect in autophagy. These results suggest that the dot structure is physiologically important. Apg2p and Apg8p are independently recruited to the structure but coordinately function there to form the autophagosome.

Highlights

  • Autophagy is a degradative process in which cytoplasmic components are non-selectively sequestered by double-membrane structures, termed autophagosomes, and transported to the vacuole

  • YEp24-based yeast genomic library was introduced into the apg2-1/apg2-1 diploid strain (ADE2/ade2) and the transformants were subjected to sporulation conditions

  • Identity of the structure is still obscure, but we reasoned that the localization of Apg2p to the structure is important for its function from several lines of evidence

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Summary

TABLE I Yeast strains used in this study

MATa SUC2 mal mel gal CUP1 X2180; apg X2180; apg MATa/MAT␣ ade2/ADE2 ura3/ura leu2/leu his3/his trp1/trp apg2–1/apg MATa ura leu trp YW5–1B; ⌬apg2ϻLEU2 YW5–1B; ⌬apg7ϻLEU2 YW5–1B; ⌬ypt7ϻLEU2 MATa ura leu his trp MATa ura leu his trp apg KA311A; ⌬apg2ϻHIS3 KA311A; ⌬apg2ϻHIS3 ⌬apg1ϻLEU2 KA311A; ⌬apg2ϻHIS3 ⌬apg5ϻHIS3 KA311A; ⌬apg2ϻHIS3 ⌬apg6ϻLEU2 KA311A; ⌬apg2ϻHIS3 ⌬apg8ϻTRP1 KA311A; ⌬apg2ϻHIS3 ⌬apg9ϻTRP1 KA311A; ⌬apg2ϻHIS3 ⌬apg14ϻLEU2 KA311A; ⌬apg2ϻHIS3 ⌬apg16ϻLEU2 MATa ade ura leu his trp lys PHO8ϻpho8⌬60 TN125; PHO8ϻpho8⌬60 ⌬apg2ϻLEU2 MAT␣ ura leu his trp lys suc2-⌬9 SEY6210; ⌬apg2ϻHIS3 SEY6210; ⌬ypt7ϻLEU2 SEY6210; ⌬apg2ϻHIS3 ⌬ypt7ϻLEU2. Showed that GFP-fused Apg8p/Aut7p localizes to the punctate structures proximal to the vacuole in addition to autophagic bodies [24]. This punctate localization of GFP-Apg8p/Aut7p needs the Apg12p-Apg5p conjugation and Apg8p lipidation system, suggesting that the structure is physiologically important. For the further understanding of the molecular mechanism of autophagy, it becomes important to elucidate how these proteins participate in autophagosome formation. We report the cloning and characterization of Apg2p. Its localization is perturbed in some apg mutants and by its own point mutation. These suggest that the structure is crucial for autophagy

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