Abstract

The acylation of anthocyanins contributes to their structural diversity. Aromatic acylation is responsible for the blue color of anthocyanins and certain flowers. Aromatic acyltransferase from Gentiana triflora Pall. (Gentianaceae) (Gt5,3′AT) catalyzes the acylation of glucosyl moieties at the 5 and 3′ positions of anthocyanins. Anthocyanin acyltransferase transfers an acyl group to a single position, such that Gt5,3′AT possesses a unique enzymatic activity. Structural investigation of this aromatic acyl group transfer is fundamental to understand the molecular mechanism of the acylation of double positions. In this study, structural analyses of Gt5,3′AT were conducted to identify the underlying mechanism. The crystal structure indicated that Gt5,3′AT shares structural similarities with other BAHD family enzymes, consisting of N and C terminal lobes. Structural comparison revealed that acyl group preference (aromatic or aliphatic) for the enzymes was determined by four amino acid positions, which are well conserved in aromatic and aliphatic CoA-binding acyltransferases. Although a complex structure with anthocyanins was not obtained, the binding of delphinidin 3,5,3′-triglucoside to Gt5,3′AT was investigated by evaluating the molecular dynamics. The simulation indicated that acyl transfer by Gt5,3′AT preferentially occurs at the 5-position rather than at the 3′-position, with interacting amino acids that are mainly located in the C-terminal lobe. Subsequent assays of chimeric enzymes (exchange of the N-terminal lobe and the C-terminal lobe between Gt5,3′AT and lisianthus anthocyanin 5AT) demonstrated that acyl transfer selectivity may be caused by the C-terminal lobe.

Highlights

  • Acyl-CoA dependent anthocyanin acyltransferases (ATs) belong to the BAHD AT family (D’Auria, 2006) and catalyze the specific transfer of an acyl group to the glucose moiety of anthocyanins, contributing to the structural diversity of anthocyanins

  • Anthocyanin ATs are regiospecific, that is, they usually catalyze the acylation of one glucose moiety at specific positions of anthocyanins, and their genes diversified after speciation of plant families, unlike the other flavonoid biosynthetic genes (Tanaka et al, 2008)

  • Among the three flavonoid BAHD AT enzymes with known structures (Gt5,3′AT, Dm3MAT3, and NtMAT1), Dm3MAT3 and NtMAT1 catalyze the transfer of a malonyl group to flavonoid ligands, while Gt5,3′AT catalyzes the transfer of a caffeoyl/coumaroyl group to the ligand

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Summary

Introduction

Acyl-CoA dependent anthocyanin acyltransferases (ATs) belong to the BAHD AT family (D’Auria, 2006) and catalyze the specific transfer of an acyl group to the glucose moiety of anthocyanins, contributing to the structural diversity of anthocyanins. Malonyl-CoA (acyl donor) and anthocyanin (acyl acceptor) binding sites were identified in Dm3MAT3, where the latter was found to be different from that of vinorine synthase, another BAHD AT (Ma et al, 2005). The ligand specificity of BAHD ATs can be investigated in two ways: (1) acyl-CoA recognition as a common binding mechanism and (2) anthocyanin recognition as diverse acyl acceptors. We determined the crystal structures of Gt5,3′AT alone and in a complex with caffeoyl-CoA using molecular replacement at 3.1 and 2.5 Å resolutions, respectively, to identify the molecular basis of substrate specificity. The crystal structures of Gt5,3′AT revealed differ­ ences in substrate recognition for an aromatic acyl-CoA donor compared to other flavonoid BAHD AT family enzymes. The specificity of Eg5AT was successfully modified to harbor 5,3′AT activity based on the crystal structure and docking model

Results and discussion
Structure of gentian acyltransferase
Caffeoyl-CoA binding site
Internal environment of anthocyanin binding pocket and acylation preference
Materials and methods
Protein expression and purification for crystallization
Crystallization and data collection
Structure determination and refinement
Ligand docking simulations
Sequence comparisons and homology modeling of Eustoma acyltransferase
Full Text
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