Abstract

Activated caspases play a central role in the execution of apoptosis by cleaving endogenous substrates. Here, we developed a high throughput screening method to identify novel substrates for caspase-3 in a neuronal cell line. Critical steps in our strategy consist of two-dimensional electrophoresis-based protein separation and in vitro caspase-3 incubation of immobilized proteins to sort out direct substrates. Among 46 putative substrates identified in MN9D neuronal cells, we further evaluated whether caspase-3-mediated cleavage of anamorsin, a recently recognized cell death-defying factor in hematopoiesis, is a general feature of apoptosis. In vitro and cell-based cleavage assays indicated that anamorsin was specifically cleaved by caspase-3 but not by other caspases, generating 25- and 10-kDa fragments. Thus, in apoptosis of neuronal and non-neuronal cells induced by various stimuli including staurosporine, etoposide, or 6-hydroxydopamine, the cleavage of anamorsin was found to be blocked in the presence of caspase inhibitor. Among four tetrapeptide consensus DXXD motifs existing in anamorsin, we mapped a specific cleavage site for caspase-3 at DSVD(209)↓L. Intriguingly, the 25-kDa cleaved fragment of anamorsin was also detected in post-mortem brains of Alzheimer and Parkinson disease patients. Although the RNA interference-mediated knockdown of anamorsin rendered neuronal cells more vulnerable to staurosporine treatment, reintroduction of full-length anamorsin into an anamorsin knock-out stromal cell line made cells resistant to staurosporine-induced caspase activation, indicating the antiapoptotic function of anamorsin. Taken together, our approach seems to be effective to identify novel substrates for caspases and has the potential to provide meaningful insights into newly identified substrates involved in neurodegenerative processes.

Highlights

  • It is crucial to identify caspase-3 substrates and their roles during neurodegeneration

  • To identify substrates directly cleaved by caspase-3, we developed a gel-based protease proteomic approach in which proteins on immobilized isoelectric focusing (IEF) strips were incubated with exogenously added recombinant caspase-3

  • We developed a high throughput screening method to find endogenous substrates that are directly cleaved by caspase-3

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Summary

Background

It is crucial to identify caspase-3 substrates and their roles during neurodegeneration. To identify substrates directly cleaved by caspase-3, we developed a gel-based protease proteomic approach in which proteins on immobilized isoelectric focusing (IEF) strips were incubated with exogenously added recombinant caspase-3. With this method, we identified 46 putative caspase-3 substrates in MN9D neuronal cells. The study using anamorsin knock-out (KO) fetal liver stromal cells overexpressing the full-length anamorsin or either of two fragments indicated that full-length anamorsin may act as a novel antiapoptotic protein in the central nervous system, and its caspase-3-mediated cleavage may represent a loss-of-function phenotype. The present study suggests that our approach is effective to identify novel caspase-3 substrates and its associated cellular function in neurodegeneration

EXPERIMENTAL PROCEDURES
RESULTS
26 S protease regulatory subunit 6A
DISCUSSION
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