Analysis of genetic diversity and population structure in accessions of the genus Melilotus

Abstract

Melilotus is one of the most important legume plants, in part due to its production of coumarin, but the genetic diversity among the 18 species remains unclear. In the present study, the analysis of genetic diversity of the Melilotus species was performed with simple sequence repeat (SSR) markers. From the PCR amplification, we selected 18 out of 70 primers that were used in previous studies. Three hundred twenty-six sampled individuals were assayed to study the genetic diversity and polymorphisms based on the SSR markers. All analyzed markers were polymorphic, and 287 alleles were identified, with 15.94 alleles per locus detected. The polymorphism information content (PIC) values ranged from 0.71 to 0.93, with an average of 0.87, which indicates that the markers were highly informative. Based on the unweighted pair-group method with arithmetic mean (UPGMA) cluster analysis, we found that the 18 species were divided into two clusters. M. italicus and M.​ speciosus from cluster A and M. indicus and M. segetalis from cluster B were closely related. Population structure analysis suggested that the optimum number of groups was three. From the analysis of molecular variance, 17.79% of the variance was due to species differences, 31.61% of the variance was due to differences among populations within species and the remaining 50.60% was due to differences within populations. The results of the present study showed that these SSR markers will benefit the Melilotus research community for genetics and breeding. Furthermore, this study also established the foundation for future breeding programs, genetic improvement and coumarin production in the Melilotus species.