Abstract
The J-Express package has been designed to facilitate the analysis of microarray data with an emphasis on efficiency, usability, and comprehensibility. The J-Express system provides a powerful and integrated platform for the analysis of microarray gene expression data. It is platform-independent in that it requires only the availability of a Java virtual machine on the system. The system includes a range of analysis tools and a project management system supporting the organization and documentation of an analysis project. This unit describes the J-Express tool, emphasizing central concepts and principles, and gives examples of how it can be used to explore gene expression data sets.
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