Abstract

doi: https://doi.org/10.15447/sfews.2016v14iss4art2 Over the past 15 years, the development and application of multi-dimensional hydrodynamic models in San Francisco Bay and the Sacramento–San Joaquin Delta has transformed our ability to analyze and understand the underlying physics of the system. Initial applications of three-dimensional models focused primarily on salt intrusion, and provided a valuable resource for investigating how sea level rise and levee failures in the Delta could influence water quality in the Delta under future conditions. However, multi-dimensional models have also provided significant insights into some of the fundamental biological relationships that have shaped our thinking about the system by exploring the relationship among X2, flow, fish abundance, and the low salinity zone. Through the coupling of multi-dimensional models with wind wave and sediment transport models, it has been possible to move beyond salinity to understand how large-scale changes to the system are likely to affect sediment dynamics, and to assess the potential effects on species that rely on turbidity for habitat. Lastly, the coupling of multi-dimensional hydrodynamic models with particle tracking models has led to advances in our thinking about residence time, the retention of food organisms in the estuary, the effect of south Delta exports on larval entrainment, and the pathways and behaviors of salmonids that travel through the Delta. This paper provides an overview of these recent advances and how they have increased our understanding of the distribution and movement of fish and food organisms. The applications presented serve as a guide to the current state of the science of Delta modeling and provide examples of how we can use multi-dimensional models to predict how future Delta conditions will affect both fish and water supply.

Highlights

  • It is notable that when the State of Bay–Delta Science 2008 (Healey et al 2008a) was published, newly emerging multi-dimensional models of the Sacramento–San Joaquin Delta (Delta) merited only a short discussion in the chapter dealing with waterSAN FRANCISCO ESTUARY & WATERSHED SCIENCE supply (Healey et al 2008b)

  • It is clear that multi-dimensional modeling of hydrodynamics in the Bay–Delta has advanced significantly in the last decade, to the point that it can be used to accurately predict of flows both locally or at the scale of the whole Delta

  • Multi-dimensional models have provided significant insights into some of the fundamental biological relationships that have shaped our thinking about the system, including exploring the relationships among X2, flow, fish abundance, and the low salinity zone (LSZ)

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Summary

INTRODUCTION

It is notable that when the State of Bay–Delta Science 2008 (Healey et al 2008a) was published, newly emerging multi-dimensional models of the Sacramento–San Joaquin Delta (Delta) merited only a short discussion in the chapter dealing with water. One application of a 3-D circulation model to the Bay–Delta is the study of unsteady salinity intrusion in northern San Francisco Bay, i.e., X2 variability with flow, reported in MacWilliams et al (2015) In this case, MacWilliams et al (2015) used the model results to develop an improved auto-regressive model, like that described in Jassby et al (1995), suitable for use in planning. The predictions of the hydrodynamics from the 3-D numerical model were integral in further understanding spatial variability in the fish catch on scales smaller than the estuary-wide salinity gradient These results demonstrated that hindcasts from multi-dimensional models can be combined with long-term data sets to explore environmental conditions at different spatial and temporal scales in order to improve the understanding of observed biological data. These insights into how changes to the hydrology and geometry of the system have affected physical habitat, provide a valuable resource to guide future restoration efforts in the estuary

B Percentage of day within LSZ
Findings
DISCUSSION AND CONCLUSIONS
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