Abstract
Several homoplasmic pathologic mutations in mitochondrial DNA, such as those causing Leber hereditary optic neuropathy or non-syndromic hearing loss, show incomplete penetrance. Therefore, other elements must modify their pathogenicity. Discovery of these modifying factors is not an easy task because in multifactorial diseases conventional genetic approaches may not always be informative. Here, we have taken an evolutionary approach to unmask putative modifying factors for a particular homoplasmic pathologic mutation causing aminoglycoside-induced and non-syndromic hearing loss, the m.1494C>T transition in the mitochondrial DNA. The mutation is located in the decoding site of the mitochondrial ribosomal RNA. We first looked at mammalian species that had fixed the human pathologic mutation. These mutations are called compensated pathogenic deviations because an organism carrying one must also have another that suppresses the deleterious effect of the first. We found that species from the primate family Cercopithecidae (old world monkeys) harbor the m.1494T allele even if their auditory function is normal. In humans the m.1494T allele increases the susceptibility to aminoglycosides. However, in primary fibroblasts from a Cercopithecidae species, aminoglycosides do not impair cell growth, respiratory complex IV activity and quantity or the mitochondrial protein synthesis. Interestingly, this species also carries a fixed mutation in the mitochondrial ribosomal protein S12. We show that the expression of this variant in a human m.1494T cell line reduces its susceptibility to aminoglycosides. Because several mutations in this human protein have been described, they may possibly explain the absence of pathologic phenotype in some pedigree members with the most frequent pathologic mutations in mitochondrial ribosomal RNA.
Highlights
Human cells contain many mitochondria and each mitochondrion several mitochondrial DNA molecules
THE HUMAN PATHOLOGICAL ALLELE m.1494T IS FIXED IN CERCOPITHECIDAE To search for the presence of m.1494T in mammalians, we aligned the MT-RNR1 gene of 608 mammalian species obtained from complete mitochondrial DNA (mtDNA) sequences of the NCBI RefSeq database
We have shown that an amino acid substitution in the mitochondrial ribosomal protein S12 (MRPS12) position 68 can compensate functional effects of 12S rRNA pathologic mutations m.1494C>T and m.1555A>G
Summary
Human cells contain many mitochondria and each mitochondrion several mitochondrial DNA (mtDNA) molecules. Despite being present in every mtDNA molecule of each cell, LHON and NSHL mutations mainly affect retinal ganglion and cochlear cells, respectively. This fact suggests that tissue-specific factors, including the specific set of expressed proteins, are required for the manifestation of the pathologic phenotype (Hamalainen et al, 2013). It is frequently found that maternal relatives of patients carrying homoplasmic mutations are asymptomatic This fact, again, suggests that other environmental and genetic factors are necessary for the phenotypic expression (Fischel-Ghodsian, 2000; Carelli et al, 2003)
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