Abstract

Biosynthesis of many ecologically important secondary metabolites (SMs) in filamentous fungi is controlled by several global transcriptional regulators, like the chromatin modifier LaeA, and tied to both development and vegetative growth. In Aspergillus molds, asexual development is regulated by the BrlA > AbaA > WetA transcriptional cascade. To elucidate BrlA pathway involvement in SM regulation, we examined the transcriptional and metabolic profiles of ΔbrlA, ΔabaA, and ΔwetA mutant and wild-type strains of the human pathogen Aspergillus fumigatus. We find that BrlA, in addition to regulating production of developmental SMs, regulates vegetative SMs and the SrbA-regulated hypoxia stress response in a concordant fashion to LaeA. We further show that the transcriptional and metabolic equivalence of the ΔbrlA and ΔlaeA mutations is mediated by an LaeA requirement preventing heterochromatic marks in the brlA promoter. These results provide a framework for the cellular network regulating not only fungal SMs but diverse cellular processes linked to virulence of this pathogen. IMPORTANCE Filamentous fungi produce a spectacular variety of small molecules, commonly known as secondary or specialized metabolites (SMs), which are critical to their ecologies and lifestyles (e.g., penicillin, cyclosporine, and aflatoxin). Elucidation of the regulatory network that governs SM production is a major question of both fundamental and applied research relevance. To shed light on the relationship between regulation of development and regulation of secondary metabolism in filamentous fungi, we performed global transcriptomic and metabolomic analyses on mutant and wild-type strains of the human pathogen Aspergillus fumigatus under conditions previously shown to induce the production of both vegetative growth-specific and asexual development-specific SMs. We find that the gene brlA, previously known as a master regulator of asexual development, is also a master regulator of secondary metabolism and other cellular processes. We further show that brlA regulation of SM is mediated by laeA, one of the master regulators of SM, providing a framework for the cellular network regulating not only fungal SMs but diverse cellular processes linked to virulence of this pathogen.

Highlights

  • Biosynthesis of many ecologically important secondary metabolites (SMs) in filamentous fungi is controlled by several global transcriptional regulators, like the chromatin modifier LaeA, and tied to both development and vegetative growth

  • Our results show that BrlA positively regulates the transcriptional activity of 13 biosynthetic gene clusters (BGCs) and their SMs; importantly, BrlA regulates the production of both asexual development-specific SMs and vegetative growth-specific SMs, and the activity of several transcriptional regulators of diverse cellular processes, such as the SrbA-regulated hypoxia stress response

  • The effect of LaeA activity on brlA transcript levels explains, to a large degree, the concordance of BGC regulation and hypoxia gene regulation by these two proteins. These results argue that LaeA and BrlA are key conserved components of the cellular network governing tissue-specific secondary metabolism as well as diverse cellular processes in filamentous fungi

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Summary

Introduction

Biosynthesis of many ecologically important secondary metabolites (SMs) in filamentous fungi is controlled by several global transcriptional regulators, like the chromatin modifier LaeA, and tied to both development and vegetative growth. To examine the genome-wide regulatory roles of the three central regulators of asexual development, we performed RNA sequencing on A. fumigatus wild-type (WT) and ΔbrlA, ΔabaA, and ΔwetA mutant strains grown on minimal medium under conditions known to induce the production of both vegetative growth-specific and asexual development-specific SMs. A total of 6,738 of the 9,784 genes in the genome of the A. fumigatus Af293 strain were differentially expressed in the ΔbrlA mutant versus WT comparison (3,358 overexpressed and 3,380 underexpressed) (Table 1; see Table S1 in the supplemental material).

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