Abstract

Colwellia is a genus of mostly psychrophilic halophilic Gammaproteobacteria frequently isolated from polar marine sediments and sea ice. In exploring the capacity of Colwellia psychrerythraea 34H to survive and grow in the liquid brines of sea ice, we detected a duplicated 37 kbp genomic island in its genome based on the abnormally high G + C content. This island contains an operon encoding for heterotetrameric sarcosine oxidase and is located adjacent to several genes used in the serial demethylation of glycine betaine, a compatible solute commonly used for osmoregulation, to dimethylglycine, sarcosine, and glycine. Molecular clock inferences of important events in the adaptation of C. psychrerythraea 34H to compatible solute utilization reflect the geological evolution of the polar regions. Validating genomic predictions, C. psychrerythraea 34H was shown to grow on defined media containing either choline or glycine betaine, and on a medium with sarcosine as the sole organic source of carbon and nitrogen. Growth by 8 of 9 tested Colwellia species on a newly developed sarcosine-based defined medium suggested that the ability to catabolize glycine betaine (the catabolic precursor of sarcosine) is likely widespread in the genus Colwellia. This capacity likely provides a selective advantage to Colwellia species in cold, salty environments like sea ice, and may have contributed to the ability of Colwellia to invade these extreme niches.

Highlights

  • Sea ice is an extreme environment characterized by the low temperature (-2 to –35 °C) and high salinity (35–270 %) of its brine inclusions, where the microbes reside (Junge et al 2001; Collins et al 2008)

  • In a previous analysis of the genome of C. psychrerythraea 34H, a psychrophilic, halophilic marine bacterium, Metheet al. (2005) identified a duplicated operon encoding for heterotetrameric sarcosine oxidase (SoxBDAG), an enzyme involved in the catabolism of glycine betaine, a common osmoprotectant molecule

  • In the present genomic analysis we have identified this operon as the result of a horizontal gene transfer event

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Summary

Introduction

Sea ice is an extreme environment characterized by the low temperature (-2 to –35 °C) and high salinity (35–270 %) of its brine inclusions, where the microbes reside (Junge et al 2001; Collins et al 2008). High salinity is known to induce several mechanisms for osmotolerance in Bacteria, Archaea, and Eukarya, with one of the most common being the intracellular accumulation of up to molar quantities of compatible solutes like glycine betaine (Bremer and Kramer 2000; Roberts 2005). These compounds may be released into sea ice brine channels as organisms adjust to seasonal or diurnal changes in brine salinity or following viral lysis or cell death. Difficult to identify in situ, recent investigations of sea ice as a hotspot for horizontal gene transfer have focused on its high concentrations of Extremophiles (2013) 17:601–610 bacteria, viruses, and extracellular free DNA, among other contributing factors (Collins and Deming 2011a, b)

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