Abstract

The implementation of applied engineering principles to create synthetic biological systems promises to revolutionize medicine, but application of fundamentally redesigned organisms has thus far not impacted practical drug development. Here we utilize an engineered microbial organism with a six-letter semi-synthetic DNA code to generate a library of site-specific, click chemistry compatible amino acid substitutions in the human cytokine IL-2. Targeted covalent modification of IL-2 variants with PEG polymers and screening identifies compounds with distinct IL-2 receptor specificities and improved pharmacological properties. One variant, termed THOR-707, selectively engages the IL-2 receptor beta/gamma complex without engagement of the IL-2 receptor alpha. In mice, administration of THOR-707 results in large-scale activation and amplification of CD8+ T cells and NK cells, without Treg expansion characteristic of IL-2. In syngeneic B16-F10 tumor-bearing mice, THOR-707 enhances drug accumulation in the tumor tissue, stimulates tumor-infiltrating CD8+ T and NK cells, and leads to a dose-dependent reduction of tumor growth. These results support further characterization of the immune modulatory, anti-tumor properties of THOR-707 and represent a fundamental advance in the application of synthetic biology to medicine, leveraging engineered semi-synthetic organisms as cellular factories to facilitate discovery and production of differentiated classes of chemically modified biologics.

Highlights

  • The implementation of applied engineering principles to create synthetic biological systems promises to revolutionize medicine, but application of fundamentally redesigned organisms has far not impacted practical drug development

  • The new codons are matched with non-natural amino acids via an orthogonal tRNA synthetase (PylRS) from M. barkeri, which exclusively aminoacylates the pylT tRNA with the click-chemistry compatible, azide-containing non-natural amino acid N6(2-azidoethoxy)-carbonyl-L-lysine[12]

  • In C57BL/6 mice bearing B16-F10 tumors, THOR-707 showed increased intratumoral distribution and retention and stimulated a significant elevation in infiltrating CD8+ T and natural killer (NK) cells and dosedependent reduction in tumor growth. These results suggest that site-specific bioconjugation of rhIL-2 with polyethylene glycol (PEG) to generate THOR-707 reprograms the pharmacological activity of this cytokine, modulating both half-life and receptor engagement profiles to create a potent CD8+ effector T and NK cell activator with reduced CD4+ Treg bias

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Summary

Introduction

The implementation of applied engineering principles to create synthetic biological systems promises to revolutionize medicine, but application of fundamentally redesigned organisms has far not impacted practical drug development. In syngeneic B16-F10 tumor-bearing mice, THOR-707 enhances drug accumulation in the tumor tissue, stimulates tumor-infiltrating CD8+ T and NK cells, and leads to a dose-dependent reduction of tumor growth These results support further characterization of the immune modulatory, anti-tumor properties of THOR-707 and represent a fundamental advance in the application of synthetic biology to medicine, leveraging engineered semi-synthetic organisms as cellular factories to facilitate discovery and production of differentiated classes of chemically modified biologics. We applied a synthetic biology platform[11] to engineer an improved and differentiated version of rhIL-2 This technology allows the facile design and production of proteins modified with non-natural amino acids at specific sites, enabling targeted bioconjugation for modulation of pharmacology and drug properties. The new codons are matched with non-natural amino acids via an orthogonal tRNA synthetase (PylRS) from M. barkeri, which exclusively aminoacylates the pylT tRNA with the click-chemistry compatible, azide-containing non-natural amino acid (nAA) N6(2-azidoethoxy)-carbonyl-L-lysine[12]

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