Abstract

Baboons are one of the most abundant large nonhuman primates and are widely studied in biomedical, behavioral, and anthropological research. Despite this, our knowledge of their evolutionary and demographic history remains incomplete. Here, we report a 0.9-fold coverage genome sequence from a 5800-year-old baboon from the site of Ha Makotoko in Lesotho. The ancient baboon is closely related to present-day Papio ursinus individuals from southern Africa—indicating a high degree of continuity in the southern African baboon population. This level of population continuity is rare in recent human populations but may provide a good model for the evolution of Homo and other large primates over similar timespans in structured populations throughout Africa.

Highlights

  • IntroductionBaboons (genus Papio) are Old World Monkeys, widely distributed throughout Africa and the Arabian Peninsula

  • Baboons are Old World Monkeys, widely distributed throughout Africa and the Arabian Peninsula

  • Low mitochondrial (1.3%) and X chromosome (0.47%) consensus mismatch at nonreference, nondamage sites indicates that contamination is low

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Summary

Introduction

Baboons (genus Papio) are Old World Monkeys, widely distributed throughout Africa and the Arabian Peninsula. The six extant species of baboon occupy largely independent geographic ranges (Jolly 1993; Zinner et al 2013) but readily hybridize in contact regions (Nagel 1973; Samuels and Altmann 1986; Jolly 1993; Jolly et al 2011). The southernmost species (P. ursinus) has two deeply diverged subspecies (ursinus and grisepes), whose history and distribution may have been shaped by historical changes in range driven by aridification cycles (Sithaldeen et al 2009; Sithaldeen et al 2015).

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