Agronomic practices preventing local outbreaks of rice yellow mottle virus disease revealed by spatial autoregressive analysis

Nobuaki Oizumi,Mchuno Alfred Peter,Motonori Tomitaka,Toru Nakajima,Naswiru Tibanyendela,Keiko T Natsuaki,Nobuhito Sekiya,Chihiro Kurosawa

doi:10.1007/s13593-022-00757-9

Abstract

Rice yellow mottle virus (RYMV) causes severe rice (Oryza sativa L.) yield loss. It has been endemic to sub-Saharan Africa and Madagascar since 1966. Transmission (plant community level) and long-dispersal (regional and continental scale) models have been established but viral spread in farming communities continues, while the conditions causing local disease outbreaks remain unclear. We hypothesized that local outbreaks, comprising inter-plot virus spread and intra-plot disease aggravation, are significantly associated with individual farmers’ attributes and agronomic practices. To test this hypothesis, spatial autoregressive models were constructed using variables collected by visual observation and farmer interviews. Field surveys were conducted during four consecutive cropping seasons from 2011 to 2013 in the Lower Moshi Irrigation Scheme of Kilimanjaro, Tanzania. Our models detected spatial dependence in inter-plot virus spread, but not in intra-plot disease aggravation. The probability of inter-plot virus spread increased with use of the IR64 cultivar (26.9%), but decreased with straw removal (27.8%) and crop rotation (47.7%). The probability of intra-plot disease aggravation decreased with herbicide application (24.3%) and crop rotation (35.4%). A simple cost-benefit analysis suggested that inter-plot virus spread should be mitigated by cultivar replacement and straw removal. When disease severity is critical, intra-plot disease aggravation should be inhibited by herbicide application, and rice should be rotated with other crops. This is the first study to upscale the spatial autoregressive model from the experimental field level to the farming community level, by obtaining variables through easy-to-implement techniques such as visual observation and farmer interview. Our models successfully identified candidate agronomic practices for the control of RYMV. However, as the causal relationships between agronomic practices and RYMV outbreaks remain unknown, field trials are needed to develop robust control measures.

Highlights

Rice yellow mottle virus (RYMV, Fig. 1a) is a member of the genus Sobemovirus in the family Solemoviridae (Sõmera et al 2015)
RYMV is a significant constraint on rice production in Sub-Saharan Africa
We constructed spatial autoregression models using dependent RYMV infection rates and independent variables determined from field surveys and farmer interviews in Tanzania

Summary

Introduction

Rice yellow mottle virus (RYMV, Fig. 1a) is a member of the genus Sobemovirus in the family Solemoviridae (Sõmera et al 2015). Its host range is restricted to rice (Oryza sativa L.) and a few wild Poaceae. It has been endemic in ricegrowing regions of sub-Saharan Africa and Madagascar since its discovery in 1966 near Lake Victoria in Kenya (Bakker 1974; Kouassi et al 2005). The characteristic symptoms of RYMV disease are mottling, yellowish leaf streaking (Fig. 1b), decreased tillering (Fig. 1c), shoot stunting (Fig. 1c), and spikelet sterility (Bakker 1970; Fauquet and Thouvenel 1977; Abo et al 2000). RYMV disease causes 10–100% yield loss depending on plant age, cultivar susceptibility, and environmental factors (Kouassi et al 2005).

Objectives

Methods

Results

Conclusion