Additional file 8 of CellNetVis: a web tool for visualization of biological networks using force-directed layout constrained by cellular components

Abstract

Visualization of the RIG-I-like receptor signaling pathway. Visualization of the network formed by the interactions within the â RIG-I-like receptor signaling pathway (KEGG)â in Homo sapiens, downloaded from InnateDB ( http://innatedb.ca/interactionSearch.do?from=pw&exPathwayXref=&pathwayFilter=5713&pathwayXrefDB=&pathwayXref=&listType=interaction&coreInteractors=true ) as a XGMML file and loaded on CellNetVis, CerebralWeb and Cerebral. (A and B) Visualization of the network on CellNetVis before (A) and after (B) manually separating nodes with high degree (dark red). The same network was draw on CerebralWeb (C) and Cerebral (D) for comparison. CellNetVis was shown to be a more flexible tool through user interaction. (TIF 5.92 kb)