Abstract
Details of physical linkage of genome scaffolds and inferred haplotype combinations at each scaffold. Two datasheets are in the file. Datasheet “31 Scaffolds”: CCNVs found in the largest 31 scaffolds are shown. A and B denote homologous haplotypes at each scaffold. Inferred haplotype combinations are shown when those are deviated from a heterozygous disomic haplotype combination, AB. AAB, AA, and A denote trisomy, cnLOH, and monosomy, respectively. AB + XXX indicates a mixture of AB disomy and trisomy with an unknown haplotype combination. HK in CCNV type indicates a heterokaryon. Scaffolds 5, 8, 14, 15, and 20 are likely physically linked, whereas each of scaffolds 9 and 10 do not link to any of the 31 largest scaffolds in the current assembly. Datasheet “Fig. 6 SNPs”: Three representative SNPs located near the left border, center and right border of each scaffold in combination with read coverage were used to infer haplotype combinations presented in Fig. 6. (XLSX 23 kb)
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