Abstract

Multiscale simulations methods, such as adaptive resolution scheme, are becoming increasingly popular due to their significant computational advantages with respect to conventional atomistic simulations. For these kind of simulations, it is essential to develop accurate multiscale water models that can be used to solvate biophysical systems of interest. Recently, a 4-to-1 mapping was used to couple the bundled-simple point charge water with the MARTINI model. Here, we extend the supramolecular mapping to coarse-grained models with explicit charges. In particular, the two tested models are the polarizable water and big multiple water models associated with the MARTINI force field. As corresponding coarse-grained representations consist of several interaction sites, we couple orientational degrees of freedom of the atomistic and coarse-grained representations via a harmonic energy penalty term. This additional energy term aligns the dipole moments of both representations. We test this coupling by studying the system under applied static external electric field. We show that our approach leads to the correct reproduction of the relevant structural and dynamical properties.

Highlights

  • Biological systems are profoundly affected by the surrounding solvent

  • The most used CG water model of this kind is the one developed by Marrink et al in the MARTINI force field

  • CG water models and will show that the structural and dynamical properties of the simulated system are well reproduced by the adaptive resolution scheme (AdResS) multiscale simulation

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Summary

Introduction

As the most important solvent, plays a crucial role in phenomena such as protein folding and stabilization of nucleic acid structure. Simulations of such systems require the use of an accurate water model. The most used CG water model of this kind is the one developed by Marrink et al in the MARTINI force field.. The most used CG water model of this kind is the one developed by Marrink et al in the MARTINI force field.9,10 In this model, the water is described as a neutral bead that represents four water molecules and has been parametrized using partitioning free energies. Artifacts arise at the interfaces between water and other phases and in the vicinity of charged particles.

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