Abstract

ObjectivesThe aim of the study was to propose and demonstrate an approach to allow additional nonsampling uncertainty about HIV prevalence measured at antenatal clinic sentinel surveillance (ANC-SS) in model-based inferences about trends in HIV incidence and prevalence.DesignMathematical model fitted to surveillance data with Bayesian inference.MethodsWe introduce a variance inflation parameter that accounts for the uncertainty of nonsampling errors in ANC-SS prevalence. It is additive to the sampling error variance. Three approaches are tested for estimating using ANC-SS and household survey data from 40 subnational regions in nine countries in sub-Saharan, as defined in UNAIDS 2016 estimates. Methods were compared using in-sample fit and out-of-sample prediction of ANC-SS data, fit to household survey prevalence data, and the computational implications.ResultsIntroducing the additional variance parameter increased the error variance around ANC-SS prevalence observations by a median of 2.7 times (interquartile range 1.9–3.8). Using only sampling error in ANC-SS prevalence ( ), coverage of 95% prediction intervals was 69% in out-of-sample prediction tests. This increased to 90% after introducing the additional variance parameter . The revised probabilistic model improved model fit to household survey prevalence and increased epidemic uncertainty intervals most during the early epidemic period before 2005. Estimating did not increase the computational cost of model fitting.Conclusions: We recommend estimating nonsampling error in ANC-SS as an additional parameter in Bayesian inference using the Estimation and Projection Package model. This approach may prove useful for incorporating other data sources such as routine prevalence from Prevention of mother-to-child transmission testing into future epidemic estimates.

Highlights

  • The primary data for estimating HIV epidemic trends in sub-Saharan Africa are sentinel surveillance of HIV prevalence among pregnant women attending antenatal clinics (ANC)

  • We recommend estimating nonsampling error in ANC sentinel surveillance (ANC-SS) as an additional parameter in Bayesian inference using the Estimation and Projection Package model. This approach may prove useful for incorporating other data sources such as routine prevalence from Prevention of mother-to-child transmission testing into future epidemic estimates

  • Estimates of HIV prevalence and incidence trends are created by statistically fitting the Estimation and Projection Package (EPP) model [1,2], a simple ‘susceptible–infected’ HIV epidemic model, to ANC sentinel surveillance (ANC-SS) prevalence and prevalence from nationally representative household surveys in a Bayesian framework

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Summary

Introduction

The primary data for estimating HIV epidemic trends in sub-Saharan Africa are sentinel surveillance of HIV prevalence among pregnant women attending antenatal clinics (ANC). A linear mixed-effects model is used to account for the potentially unbalanced repeated observations at the same sites when inferring a population prevalence trend from ANC-SS [3]. One assumption underpinning this estimation is the discrepancies between the model predictions, and the observed ANC-SS prevalence is explained by the random sampling error expected based on the sample sizes in each clinic [3]

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