Abstract

The functional properties of inositol(1,4,5)-triphosphate (IP3) receptors allow a variety of intracellular Ca2+ phenomena. In this way, global phenomena, such as propagating and abortive Ca2+ waves, as well as local events such as puffs, have been observed. Several experimental studies suggest that many features of global phenomena (e.g., frequency, amplitude, speed wave) depend on the interplay of biophysical processes such as diffusion, buffering, efflux and influx rates, which in turn depend on parameters such as buffer concentration, Ca2+ pump density, cytosolic IP3 level, and intercluster distance. Besides, it is known that cells are able to modify some of these parameters in order to regulate the Ca2+ signaling. By using a hybrid model, we analyzed different features of the hierarchy of calcium events as a function of two relevant parameters for the calcium signaling, the intercluster distance and the pump strength or intensity. In the space spanned by these two parameters, we found two modes of calcium dynamics, one dominated by abortive calcium waves and the other by propagating waves. Smaller distances between the release sites promote propagating calcium waves, while the increase of the efflux rate makes the transition from propagating to abortive waves occur at lower values of intercluster distance. We determined the frontier between these two modes, in the parameter space defined by the intercluster distance and the pump strength. Furthermore, we found that the velocity of simulated calcium waves accomplishes Luther’s law, and that an effective rate constant for autocatalytic calcium production decays linearly with both the intercluster distance and the pump strength.

Highlights

  • Cytosolic-free calcium (Ca2+) is a ubiquitous intracellular messenger for regulating a diverse range of cellular processes, such as gene transcription, muscle contraction, secretion, fertilization, and cell proliferation

  • In this way, when the distance between clustered IP3Rs is shorter than 1.6 mm and the intensity of calcium uptake by sarco-endoplasmic reticulum ATPases (SERCAs) is smaller than 1.2 mM/s, the high availability of Ca+2 observed in the cytosol prevents the identification of discrete Ca+2 release events

  • In the present work we propose a hybrid model of spatially distributed IP3R clusters by considering a partial differential equation for the Ca2+ dynamics in the cytoplasm and a Markov-stochastic kinetic model for the IP3R channels

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Summary

Introduction

Cytosolic-free calcium (Ca2+) is a ubiquitous intracellular messenger for regulating a diverse range of cellular processes, such as gene transcription, muscle contraction, secretion, fertilization, and cell proliferation. In order to control this variety of functions, calcium is precisely regulated in space and time. In cells that are not electrically excitable, calcium is stored in the endoplasmic reticulum (ER). Changes in the intracellular Ca2+ concentration are due fundamentally to the exchange between the cytosol and the ER. In this way, part of the calcium. PLOS ONE | DOI:10.1371/journal.pone.0115187 January 20, 2015

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