A-299 Clinical Performance Validation of 7 qPCR Kits for the Specific Diagnosis of 5 Enteric Viruses in Clinical Stool Samples

Abstract

Abstract Background Among the most prevalent enteric viruses associated with gastroenteritis are norovirus (NoV), rotavirus (RV), astrovirus (AstV), sapovirus (SaV) and adenovirus (AdV). The diagnosis of infections associated with gastroenteritis viruses is mainly based on the detection of the genome of these viruses by molecular methods, mainly qPCR and RTqPCR reactions. The aim of this study was to validate the diagnostic performance of 7 qPCR diagnostic kits of the “VIASURE Real Time PCR Detection Kits” series with respect to commercial reference kits used for the diagnosis of these pathogens. Methods A total of 318 clinical stool samples were used, including: 213 stool samples from children from sporadic cases of gastroenteritis collected between 2016–2018; 94 samples from outbreaks of gastroenteritis caused by NoV between 2017–2019; and 11 samples from healthy children with asymptomatic enteric virus infections collected between 2017–2018. Seven VIASURE kits were used for the specific detection of enteric viruses. At the same time, samples were also tested with the following commercial kits used as reference methods: RIDA®GENE Viral Stool Panel II (rotavirus, adenovirus 40/41 and astrovirus) and RIDA®GENE Sapovirus, RIDA®GENE Norovirus I & II. In the case of AdV, the positivity of the samples was confirmed using the qPCR protocol published by Heim et al. (2003). Results The results obtained are summarized in Table 1. Conclusion The results obtained show a high sensitivity and specificity of the VIASURE kits for the detection of rotavirus, adenovirus, sapovirus, astrovirus and norovirus GI and GII (in the latter case using both the monoplex and multiplex product). In addition, it should be noted that all these kits share the same thermal protocol, thus allowing their joint use for the simultaneous diagnosis of these 5 enteric viruses.