A vibrational spectroscopic approach to elucidate the molecular mechanism behind the channel activity of viroporins.

Abstract

The prevalence of diseases caused by pathogenic viruses and the scarcity of treatment and vaccination options call for extensive research of the molecular mechanisms underlying the function of these viruses. Small hydrophobic viral proteins with ion channel activity, so-called viroporins, are involved in the virus particle entry into and release from the host cell. One of these viroporins, the Influenza A M2 channel, has shown to be the target for anti-viral drugs motivating spectroscopic investigations of other viroporins to understand their relevance as potential anti-viral treatment targets. We used the Influenza A M2 viroporin as a model system to establish a vibrational spectroscopic approach to examine the gating mechanism and proton conductance of this pH-activated proton channel. In this work, we immobilized reconstituted M2 on a self-assembled monolayer bound to a nanostructured gold film that can be used for surface-enhanced infrared absorption (SEIRA) spectroscopy. Employing pH-induced SEIRA difference spectroscopy we monitor protonation events and changes in the α-helix amide I absorption due to a pH-dependent channel opening that leads to proton conductivity. Furthermore, the surface selection rule of SEIRA enabled us to observe the reorientation of the α-helical structures associated with the channel opening in-situ. Combining the spectroscopic data with computational vibrational spectroscopic calculations we model the large-scale reorganization of M2's α-helices, and by this quantify the opening angle of the channel transitioning from closed to the activated state. We aim to utilize this approach to enable a combined structural and functional analysis of viroporins of current relevance.