A taxonomic and phylogenetic perspective on plant community assembly along an elevational gradient in subtropical forests

Aim Growing evidence suggests that, in addition to taxonomic diversity, examining functional and phylogenetic diversity offers distinct yet complementary insights into the spatial and temporal patterns of biodiversity and their driving mechanisms. Here, using a data set comprising 40 years (comparisons of 1984–1995 vs. 2010–2024), we examined spatial and temporal patterns of taxonomic, functional and phylogenetic alpha and beta diversity in fish assemblages in the Pearl River Basin (PRB), China. Location Pearl River Basin, China. Methods We used multi‐faceted diversity, principal coordinate analysis and non‐metric multidimensional scaling to analyse the spatial and temporal changes in fish biodiversity; Mantel tests and variation partitioning analysis were used to analyse the role of environmental and spatial variables on the multi‐faceted diversity indices. Results Fish assemblages exhibited significant spatial and temporal differences. Taxonomic alpha diversity of the PRB declined, but functional and phylogenetic alpha diversity increased over the analysed time period. Taxonomic and phylogenetic beta diversity showed an increased trend, but functional beta diversity declined over time. The nestedness component towards taxonomic and phylogenetic beta diversity was higher and lower than the spatial turnover component in the analysed time periods, respectively. In addition, the nestedness component towards functional beta diversity was higher than the spatial turnover component in the historical time period, and was lower in the current time period. Environmental variables were more important than spatial variables in explaining the taxonomic diversity, and spatial variables were more important in explaining functional and phylogenetic diversity in the two analysed time periods. Main Conclusions These results highlight the importance of evaluating taxonomic, functional and phylogenetic alpha and beta diversity to better understand biodiversity patterns and their driving mechanisms. Overall, the information provided by the three types of diversity is more comprehensive and offers valuable insights for biodiversity conservation, as well as monitoring and management of the PRB or other subtropical rivers experiencing similar anthropogenic disturbances.

Aims Understanding what drives the variation in species composition and diversity among local communities can provide insights into the mechanisms of community assembly. Because ecological traits are often thought to be phylogenetically conserved, there should be patterns in phylogenetic structure and phylogenetic diversity in local communities along ecological gradients. We investigate potential patterns in angiosperm assemblages along an elevational gradient with a steep ecological gradient in Changbaishan, China. Methods We used 13 angiosperm assemblages in forest plots (32 × 32 m) distributed along an elevational gradient from 720 to 1900 m above sea level. We used Faith’s phylogenetic diversity metric to quantify the phylogenetic alpha diversity of each forest plot, used the net relatedness index to quantify the degree of phylogenetic relatedness among angiosperm species within each forest plot and used a phylogenetic dissimilarity index to quantify phylogenetic beta diver sity among forest plots. We related the measures of phylogenetic structure and phylogenetic diversity to environmental (climatic and edaphic) factors. Important Findings Our study showed that angiosperm assemblages tended to be more phylogenetically clustered at higher elevations in Changbaishan. This finding is consistent with the prediction of the phylogenetic niche conservatism hypothesis, which highlights the role of niche constraints in governing the phylogenetic structure of assemblages. Our study also showed that woody assemblages differ from her baceous assemblages in several major aspects. First, phylogenetic clustering dominated in woody assemblages, whereas phylogenetic overdispersion dominated in herbaceous assemblages; second, patterns in phylogenetic relatedness along the elevational and temperature gradients of Changbaishan were stronger for woody assemblages than for herbaceous assemblages; third, environmental variables explained much more variations in phylogenetic relatedness, phylogenetic alpha diversity and phylogenetic beta diversity for woody assemblages than for herbaceous assemblages.

Environmental factors are primary determinants of different facets of pond macroinvertebrate alpha and beta diversity in a human-modified landscape

The ecological and evolutionary mechanisms underlying montane biodiversity patterns remain unresolved. To understand which factors determined community assembly rules in mountains, biogeographic affinity that represents the biogeographic and evolutionary history of species should incorporate with current environments. We aim to address two following questions: 1) How does plant taxonomic and phylogenetic diversity with disparate biogeographic affinities vary along the subtropical elevational gradient? 2) How do biogeographic affinity and environmental drivers regulate the community assembly? We collected woody plant survey data of 32 forest plots in a subtropical mountain of Mt. Guanshan with typical transitional characteristics, including 250 woody plant species belonging to 56 families and 118 genera. We estimated the effects of biogeographic affinity, climate and soil properties on taxonomic and phylogenetic diversity of plant communities employing linear regression and structural equation models. We found that the richness of temperate-affiliated species increased with elevations, but the evenness decreased, while tropical-affiliated species had no significant patterns. Winter temperature directly or indirectly via biogeographic affinity shaped the assemblage of woody plant communities along elevations. Biogeographic affinity affected what kind of species could colonize higher elevations while local environment determined their fitness to adapt. These results suggest that biogeographic affinity and local environment jointly lead to the dominance of temperate-affiliated species at higher elevations and shape the diversity of woody plant communities along elevational gradients. Our findings highlight the legacy effect of biogeographic affinity on the composition and structure of subtropical montane forests.

Soil fungal communities play a critical role in the promotion of nutrient cycling and the stabilization of ecosystem functions in subtropical forests. Yet, clarifying the relationships between soil fungal diversity and microclimate variability along an elevational gradient, as well as understanding the driving mechanisms of their variations in subtropical forests, remains insufficiently understood. In this study, we recorded the composition and soil fungal diversity along an elevational gradient in Daiyun Mountain of China, aiming to elucidate the primary factors influencing the structure of the dominant soil fungal along an elevational gradient in subtropical forests. The results showed that (1) the dominant phylum of soil fungi at different elevations were Basidiomycota, Ascomycota (relative abundance > 10%) and Zygomycota (relative abundance > 1%). The Simpson index of soil fungi showed a clear upward trend along the elevational gradient, while no significant difference was observed in the other indices, and both overall reached their maximum value at the elevation of 1200 m. (2) The mean annual soil temperature and moisture, soil pH and available phosphorus were the main factors driving the dominant soil fungal along the elevational gradient. (3) Co–occurrence network analyses revealed a distinct modular structure of dominant soil fungal communities at different elevations, with Ascomycetes identified as the key taxa in fungi network relationships. Our research holds ecological significance in understanding the pivotal role of soil environmental factors in shaping the complex composition and interactions within soil fungal communities.

Elevational patterns of bird alpha and beta diversity in Haba Snow Mountain, Southwestern China: Implication for conservation

AimHow tree taxonomic and phylogenetic diversity vary with elevation at multiple spatial scales may provide new insights into the ecological and evolutionary processes influencing biogeographical patterns. The effect of water‐ and energy‐related climatic variables on forests diversity across elevations, as well as how clades have evolved on and established across mountain regions lack consensus. Here, we tested whether changes in biodiversity with elevation are consistent with one of, or multiple, competing hypotheses: the water–energy dynamics (WED), species–energy relationship (SER), Tropical Niche Conservatism (TNC) and Out of The Tropics hypothesis (OTT).LocationPatia watershed, ColombiaTaxonSeed plants (trees)MethodsWe used a large dataset of 490 0.1 ha forest plots in nine elevational belts (545–3410 m a.s.l) that correspond to three different life zones, and quantified alpha and gamma scales using taxonomic and phylogenetic diversity indices. We fitted linear mixed‐effects models to evaluate how taxonomic and phylogenetic alpha diversity changed with elevation, precipitation and aboveground biomass. We assessed taxonomic and phylogenetic beta diversity using the Sørensen index and its spatial turnover and nestedness components.ResultsTaxonomic and phylogenetic alpha diversity decrease with elevation. Yet, at the gamma scale, taxonomic and phylogenetic diversity predominantly increased with elevation. Taxonomic and phylogenetic beta diversity were strongly influenced by species turnover, and followed a hump‐shaped pattern with elevation.Main conclusionsOverall, diversity shows a decreasing trend at the local scale, while coarse‐scale gamma diversity followed a pattern of nonlinear increases for both taxonomic and phylogenetic diversity. Evidence supports the influence of SER and WED on diversity patterns across elevations, yet neither evolutionary hypotheses had sufficient empirical support to be conclusive.

The study of biodiversity has tended to focus primarily on relatively information‐poor measures of species diversity. Recently, many studies of local diversity (alpha diversity) have begun to use measures of functional and phylogenetic alpha diversity. Investigations into the phylogenetic and functional dissimilarity (beta diversity) of communities have been far less numerous, but these dissimilarity measures have the potential to infer the mechanisms underlying community assembly and dynamics. Here, we relate levels of phylogenetic and functional alpha diversity to levels of phylogenetic and functional beta diversity to infer the mechanism or mechanisms responsible for the assembly of tree communities in six forests located in tropical and temperate latitudes. The results show that abiotic filtering plays a role in structuring local assemblages and governing spatial turnover in community composition and that phylogenetic measures of alpha and beta diversity are not strong predictors of functional alpha and beta diversity in the forests studied.

Environmental filtering (EF) and dispersal filtering (DF) are widely known to shape plant community assembly. Particularly in arid and semi-arid mountainous regions, however, it remains unclear whether EF or DF dominate in the community assembly of different life forms or how they interact along elevational gradients. This research aims to reveal how different ecological processes influence herbaceous and woody community assembly and how they respond to various environmental drivers and elevational gradients. Here we integrated taxonomic diversity (TD), phylogenetic diversity (PD), and ecological drivers across an elevational gradient of 1,420 m in the Helan Mountain Nature Reserve, in typical arid and semi-arid areas of China. This study showed that the TD and PD of herbaceous communities significantly increase linearly with changing elevation gradients, while woody ‘TD’ showed a unimodal pattern, and there was little relationship between woody ‘PD’ and elevation. Herbaceous species exhibited significant phylogenetic clustering at low elevations, where they were influenced by climate, aspect, and tree cover. However, woody species exhibited random patterns across elevations. Herbaceous and woody species’ taxonomic and phylogenetic beta diversity is governed primarily by spatial turnover rather than nestedness. Spatial turnover is caused primarily by EF and DF’s combined influence, but their relative importance differs between herbaceous and woody communities. Therefore, we conclude that the responses of herbaceous and woody plants along elevation gradients in the Helan Mountains are decoupled due to their different adaptation strategies to climate factors in the drylands. These findings are important for understanding the assembly mechanisms driving plant communities in dryland under the context of dramatic increases in drought driven by climate warming.

ABSTRACTThe distribution of biodiversity along elevational gradients and the drivers of these patterns are research hotspots in community ecology; nonetheless, these aspects remain insufficiently understood. To address this, we established 24 plots along an elevational gradient from 300 to 1400 m on Daming Mountain, Guangxi, China, and examined the patterns and drivers of species and phylogenetic diversity along this gradient via polynomial regression, generalized linear mixed model, correlation analysis, and redundancy analyses. With increasing elevation, species and phylogenetic diversity showed a hump‐shaped trend, and the phylogenetic structures exhibited clustering at both low and high elevations, whereas at mid‐elevations, a coexistence of clustered and overdispersed structures was observed. Elevation, soil nitrate nitrogen content, and slope collectively constituted the key environmental factors driving the spatial patterns of species diversity. Meanwhile, soil nitrate nitrogen and ammonium nitrogen contents had a decisive influence on phylogenetic diversity. These findings, which reveal the patterns of diversity of woody plant communities along an elevational gradient on Daming Mountain, will contribute to the development of biodiversity conservation strategies for the region.

Although elevational gradients of biodiversity have long been the topic of scientific research, information on patterns of, and processes that shape insect community structure across elevation is still lacking. Addressing this gap requires the use of both taxonomic and functional approaches when studying diversity across elevational gradients. In this study, we examined taxonomic and functional alpha and beta diversity of ant assemblages sampled along tropical, subtropical, and subalpine elevational transects in Yunnan Province, southwest China. Species richness was used to quantify taxonomic alpha diversity, and two indices (FD and FRic) were calculated using morphological measurements to quantify functional alpha diversity. Taxonomic and functional beta diversity were partitioned into their turnover- and nestedness-resultant components. Though temperature and functional alpha diversity decreased linearly with increasing elevation, taxonomic alpha diversity showed a significant logarithmic decrease, with few species present at elevations greater than 3000 m a.s.l. The turnover-resultant component of taxonomic beta diversity increased with increasing elevational distance, while the nestedness-resultant component of functional beta diversity increased with increasing elevational distance in the subtropical transect. The observed patterns of taxonomic and functional diversity reflected ants’ thermophilic nature, implying functional adaptations (i.e., nested functional diversity) at higher elevations where environmental conditions were unfavorable.

Soil seed banks along elevational gradients in tropical, subtropical and subalpine forests in Yunnan Province, southwest China

1. We address associations of taxonomic diversity (TD), functional diversity (FD), and phylogenetic diversity (PD) of ant assemblages with gradients of elevation to assess whether energetic limitations or deterministic or stochastic niche‐building processes are more relevant to the assembly of communities.2. We sampled ant assemblages using pitfall traps in grassland habitats along an elevational gradient of 1712 m in the Guadarrama Mountains of Central Spain. The relationships of alpha and beta diversity metrics with soil temperature, productivity, elevation, and geographical distances were examined with generalised additive (mixed) models.3. The facets of diversity showed strong and partially coincident responses to the gradients, but the responses and the similarities among them weakened or disappeared when the effects of species richness were factored out. TD and FD changed roughly in a similar manner with elevation and productivity, but PD did not show clear responses to those factors. Taxonomic and functional richness increased with productivity and decreased with elevation. Mean pairwise functional and phylogenetic dissimilarities did not change along the gradients. Elevation and productivity gradients accounted for much of the beta TD among assemblages but only explained a moderate variation of functional traits and phylogenetic relationships, while geographical distances were more explanatory of beta PD.4. The partial redundancies among facets of diversity suggest that the spatial variation of diversity is mainly related to the sheer number of species. However, both environmental filtering and limiting similarity could be acting in concordance to reduce the number of species present in communities.

Elevation gradients are drivers of species diversity, and, recently, studies have considered the evolutionary process in shaping community assembly patterns. Patterns of plant species richness across elevational gradients have been studied in different parts of the Atlantic Forest; however, little is known about plant phylogenetic diversity patterns. Thus, we aimed to analyse the phylogenetic diversity of angiosperm trees along an elevation gradient in southern Brazilian Plateau, in the subtropical portion of the Atlantic Forest. We expected a decrease in phylogenetic diversity along the elevation gradient, from lowlands towards to highlands, where species may be evolutionary closely related as many tropical lineages are not capable to inhabit colder conditions. We also investigated the distribution of phylogenetic clades along the elevation gradient through principal coordinates of phylogenetic structure. Data were obtained from 28 phytosociological surveys distributed across different elevation levels, ranging from 40 to 975 m. We found a negative association between phylogenetic diversity and the elevation gradient. The representativeness of families Myrtaceae and Lauraceae increased with elevation, while most of the families decreased in species richness and are replaced by temperate families such as Winteraceae (Drimys) in higher elevations. The decrease in phylogenetic diversity with increasing elevation may be linked to niche conservatism of tropical lineages that retain their historical climatic niches and thus many species are not capable to inhabit colder environments. Most tropical clades are restricted to lower elevations; however, Myrtaceae and Lauraceae probably evolved tolerance to colder temperatures during glacial cycles. Furthermore, the probably long‐term climate stability in lowlands than highland areas may have promoted the co‐occurrence of distantly related species, resulting in higher phylogenetic diversity. Finally, we observed how historical imprints and current environmental conditions shape the phylogenetic diversity of angiosperm tree species in subtropical Atlantic Forest.

Montane oceanic islands possess unique geographic and ecological attributes, rendering them valuable for assessing patterns and drivers of alpha and beta taxonomic, functional, and phylogenetic diversity along elevational gradients. Such comparisons of diversity facets can provide insights into the mechanisms governing community assembly on islands. Herein, we aimed to characterize taxonomic, functional, and phylogenetic bryophyte diversity on Madeira Island within and across areas at varying elevations. We also assessed how these diversity facets for the alpha and beta components relate to ecological and anthropogenic factors. We estimated and compared alpha and beta taxonomic, functional, and phylogenetic diversity using 80 plots of 0.5 m × 0.5 m across the whole elevational gradient of the island. We compiled trait databases and supplemented them with our own observations. Phylogenetic information was sourced from the Moss and Liverwort Tree of Life. To assess the impact of ecological and anthropogenic factors on the three facets, we applied linear mixed-effects models and generalized dissimilarity models to alpha- and beta-diversity matrices, respectively. All facets of diversity exhibited strong correlations within both mosses and liverworts, indicating a substantial congruence when alpha and beta are analyzed separately. The bryophyte groups categorized by the growth form demonstrated contrasting patterns, aligning with their distinctive ecological requirements. While a mid-elevation peak emerged as a common pattern across the three facets of alpha diversity, beta diversity often displayed the opposite trend. Although the relative influence of environmental factors varied depending on the diversity facet and bryophyte grouping considered, we found that alpha and beta diversity of bryophytes are more influenced by climatic factors and the predominant type of vegetation than by anthropogenic factors. In the current context of global change, these results should be interpreted with caution, but they point to the resilience of bryophytes to survive in relatively well-preserved natural microhabitats within anthropogenic landscapes. In this study on Madeira Island, we investigated patterns and drivers of alpha and beta taxonomic, functional, and phylogenetic diversity along elevational gradients. We found that alpha and beta diversity of bryophytes are more strongly influenced by climatic factors and the predominant type of vegetation than by anthropogenic factors.