Abstract

Upon encounter with Ag, B cells undergo a sequential process of differentiation to become Ab-secreting plasma cells. Although the key drivers of differentiation have been identified, research has been limited by the lack of in vitro models recapitulating the full process for murine B cells. In this study, we describe methodology using BCR or TLR ligation to obtain plasma cells that are phenotypically mature, have exited cell cycle and express a gene signature concordant with long-lived plasma cells. Dependent on the initial stimuli, the transcriptomes also show variation including the enhanced expression of matrisome components after BCR stimulation, suggestive of unique functional properties for the resultant plasma cells. Moreover, using the new culture conditions we demonstrate that alternative promoter choice regulating the expression of the master transcription factor Blimp-1/Prdm1 can be observed; when the canonical B cell promoter for Prdm1 is deleted, differentiating B cells exhibit flexibility in the choice of promoter, dictated by the initiating stimulus, with preferential maintenance of expression following exposure to TLR ligation. Thus our system provides a readily tractable model for furthering our understanding of plasma cell biology.

Highlights

  • A System for In Vitro Generation of Mature Murine Plasma Cells Uncovers Differential Blimp-1/Prdm1 Promoter Usage

  • Ab-secreting cells (ASCs) generated in culture typically express the differentiation-associated marker CD138 and maintain the B cell marker B220 [27], fail to terminally differentiate into plasma cells characterized by loss of the B220 marker (Fig. 1A) and exit from cell cycle

  • This culture consists of three stages: 1) commitment to differentiation through initial stimulation in the presence of CD40L, 2) removal of CD40L to enable expansion of activated B cells, and 3) maturation of plasma cells using niche-like factors such as IL-6 and APRIL

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Summary

Materials and Methods

Spleen tissue was harvested from sex- and age-matched C57BL/6, Blimp-1Ÿ Venus [18] or Prdm1Dex1A mice [15] Cells were incubated with either 1.5 mM EdU for 24 h or 10 mM EdU for 2 h prior to processing with the Click-iT EdU Kit (Alexa Fluor 647; Thermo Fisher Scientific) following the manufacturer’s protocol on the day of staining. The D0-D10 TLR/BCR and D0-D7 LPS/TLR/BCR (wild-type [WT]/ Dex1A) samples were used to generate two input data sets for PGCNA analysis by selecting genes differentially expressed (false discovery rate < 0.05) either temporally or between conditions. This resulted in TLR/BCR and LPS/TLR/BCR data sets of 15,245 and 15,887 genes respectively which were analyzed with pgcna2 [settings -n 1000, -f 1, -b 100] Statistical analysis of differential exon usage of Prdm transcripts was performed using the DEXSeq integrative R package (v. 1.30) [26], visualizing relative exon usage (splicing 5 TRUE; i.e., remove overall expression changes)

Results
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