Abstract

In order to understand its diverse functions, we have studied cohesin in the evolutionarily distant ciliate model organism Tetrahymena thermophila. In this binucleate cell, the heritable germline genome is maintained separately from the transcriptionally active somatic genome. In a previous study, we showed that a minimal cohesin complex in Tetrahymena consisted of homologs of Smc1, Smc3, and Rec8, which are present only in the germline nucleus, where they are needed for normal chromosome segregation as well as meiotic DNA repair. In this study, we confirm that a putative homolog of Scc3 is a member of this complex. In the absence of Scc3, Smc1 and Rec8 fail to localize to germline nuclei, Rec8 is hypo-phosphorylated, and cells show phenotypes similar to depletion of Smc1 and Rec8. We also identify a homolog of Scc2, which in other organisms is part of a heterodimeric complex (Scc2/Scc4) that helps load cohesin onto chromatin. In Tetrahymena, Scc2 interacts with Rec8 and Scc3, and its absence causes defects in mitotic and meiotic divisions. Scc2 is not required for chromosomal association of cohesin, but Rec8 is hypo-phosphorylated in its absence. Moreover, we did not identify a homolog of the cohesin loader Scc4, and no evidence was found of auxiliary factors, such as Eco1, Pds5, or WAPL. We propose that in Tetrahymena, a single, minimal cohesin complex performs all necessary functions for germline mitosis and meiosis, but is dispensable for transcription regulation and chromatin organization of the somatic genome.

Highlights

  • The accurate segregation of chromosomes depends on an evolutionarily conserved multi-subunit complex known as cohesin

  • We show that Structural and biochemical analysis of Psc3 (Scc3) is not present in the somatic nucleus, which is consistent with the localization of the other cohesin proteins studied to date (Rec8, Smc1, Scc3) (Howard-Till et al 2013)

  • The absence of cohesin components from the somatic nucleus is somewhat notable, as roles for cohesin in interphase genome organization and gene regulation have almost begun to eclipse its roles in cohesion

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Summary

Introduction

The accurate segregation of chromosomes depends on an evolutionarily conserved multi-subunit complex known as cohesin. In addition to its function in cohesion, cohesin has been shown to be involved in genome organization, gene transcription, and DNA repair (Sjögren and Nasmyth 2001; Watrin and Peters 2006, 2009; Sjögren and Ström 2010; Seitan et al 2011; Merkenschlager and Odom 2013). Two structural maintenance of chromosome proteins, Smc and Smc, interact with each other to form a V-shaped heterodimer. A ring-like structure forms when an α-kleisin protein (Scc1/Rad21/Rec8) binds to the Smc1-Smc dimer (Haering and Jessberger 2012; Remeseiro and Losada 2013; Gruber 2017). Scc has been implicated in cohesin loading (Hu et al 2011), maintenance of cohesion (Roig et al 2014), and release from DNA (Hauf et al 2005). The initial association of cohesin with chromatin takes place with the help of the Scc2-Scc (Nipbl-Mau in mammals) loader complex which stimulates ATP hydrolysis by the ATPase of the Smc and Smc head domains (Ciosk et al 2000; Murayama and Uhlmann 2014)

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