Abstract
Creatine kinase (CK) helps maintain homeostasis of intracellular ATP level by catalyzing the reversible phosphotransfer between ATP and phosphocreatine. In humans, there are two cytosolic CK isoforms, the muscle-type (M) and the brain-type (B), which frequently function as homodimers (hMMCK and hBBCK). Interestingly, these isoenzymes exhibit significantly different thermostabilities, despite high similarity in amino acid sequences and tertiary structures. In order to investigate the mechanism of this phenomenon, in this work, we first used domain swapping and site-directed mutagenesis to search for the key residues responsible for the isoenzyme-specific thermostability. Strikingly, the difference in thermostability was found to principally arise from one single residue substitution at position 36 (Pro in hBBCK vs. Leu in hMMCK). We then engaged the molecular dynamics simulations to study the molecular mechanism. The calculations imply that the P36L substitution introduces additional local interactions around residue 36 and thus further stabilizes the dimer interface through a complex interaction network, which rationalizes the observation that hMMCK is more resistant to thermal inactivation than hBBCK. We finally confirmed this molecular explanation through thermal inactivation assays on Asp36 mutants that were proposed to devastate the local interactions and thus the dimer associations in both isoenzymes.
Highlights
Phylogeny[12,13]
Considering the high sequence identity and structural similarity between human BBCK (hBBCK) and human MMCK (hMMCK), their significant difference in thermal stabilities should arise from the few amino acids that are distinct in the two isoenzymes
The hMMCK is 14.5 °C more stable than the hBBCK, while the thermal stabilities of the chimeras fall between the two wild-type (WT) isoforms (Figs 1b & S2a; Table S1)
Summary
Phylogeny[12,13]. The two cytosolic CK genes are proposed to evolve late from the same ancestor through gene duplication[14], and they exhibit a high sequence identity of 80%. Among the factors proposed in previous studies as contributors to the hyperthermostability of thermophilic enzymes[27,28,29,30], the number of ion pairs is conventionally considered as the most important one, since it is the only indicator that statistically significantly rises in the thermophilic enzymes when compared to their mesophilic homologues[31] This factor, does not show significant difference between the hBBCK and hMMCK isoenzymes, and fails to explain the drastic distinction in their thermal stabilities. It is of great interest to investigate the factors determining the isoenzyme-specific thermostability of human cytosolic CKs. Considering the high sequence identity and structural similarity between hBBCK and hMMCK, their significant difference in thermal stabilities should arise from the few amino acids that are distinct in the two isoenzymes. This molecular explanation was confirmed by a control experiment in both hBBCK and hMMCK, where Asp was introduced at position 36 to completely abolish the local interactions and to greatly impair the thermostability
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