A set of positively regulated flagellar gene promoters in Caulobacter crescentus with sequence homology to the nif gene promoters of Klebsiella pneumoniae

Abstract

The study reported here describes nuclease S 1 mapping of the in-vivo transcription start sites of transcription units I and III of the hook gene cluster of Caulobacter crescentus. We show that transcription units I and II of this flagellar ( fla) gene cluster, which have divergent promoters with transcription start sites separated by 218 nucleotides, are under positive transcriptional control by genes in transcription unit III. The promoters of transcription units I, II, and III were compared with flagellin gene promoters P25, P27 and P29 recently identified in C. crescentus. Promoters PII, P25, and P27, which are under positive regulation by transcription units III to V have strongly conserved sequence elements at −13 and −24 with the consensus sequence (C/T)TGGC(C/G)C-N5-TTGC. The −13, −24 sequence elements are not well conserved in promoter PI, but the promoter does contain a copy of the −13 and −24 consensus sequence 23 base-pairs upstream (PI ∗). The C. crescentus fla gene promoters are not homologous to the canonical Escherichia coli −10, −35 promoter sequence, but they are very similar to the −12, −24 nif gene promoter sequence reported for Klebsiella pneumoniae and Rhizobium sp. The four positively regulated fla gene promoters examined here also share a third conserved element designated II-1, with the consensus sequence C-C-CGGC--AAA--GC-G, located at approximately −100. We speculate that the conserved sequence elements mapping at −13, −24 and −100 are cis-acting regulatory elements required for the transcription and periodic regulation of these fla genes in the C. crescentus cell cycle.