Abstract

Computer-aided diagnosis of pathological images usually requires detecting and examining all positive cells for accurate diagnosis. However, cellular datasets tend to be sparsely annotated due to the challenge of annotating all the cells. However, training detectors on sparse annotations may be misled by miscalculated losses, limiting the detection performance. Thus, efficient and reliable methods for training cellular detectors on sparse annotations are in higher demand than ever. In this study, we propose a training method that utilizes regression boxes' spatial information to conduct loss calibration to reduce the miscalculated loss. Extensive experimental results show that our method can significantly boost detectors' performance trained on datasets with varying degrees of sparse annotations. Even if 90% of the annotations are missing, the performance of our method is barely affected. Furthermore, we find that the middle layers of the detector are closely related to the generalization performance. More generally, this study could elucidate the link between layers and generalization performance, provide enlightenment for future research, such as designing and applying constraint rules to specific layers according to gradient analysis to achieve “scalpel-level” model training.

Highlights

  • Locating and counting cells in the pathological whole slide images (WSIs) is a direct way to find effective and important biomarkers, which is an essential and fundamental task of pathological image analysis [1,2,3]

  • The Quantization Results We evaluate the performance of our Boxes Density Energy (BDE) which is trained on datasets with different retentive-rates, and observe that BDE is a robust training method, which is hardly affected by the quality of data annotations

  • Feature Pyramid Network (FPN) decreased by 23.88%, and Label Smooth (LS) decreased by 27.17%, and ProSelfLC decreased by 21.05%

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Summary

Introduction

Locating and counting cells in the pathological whole slide images (WSIs) is a direct way to find effective and important biomarkers, which is an essential and fundamental task of pathological image analysis [1,2,3]. The qualitative and quantitative analysis of different types of tumors at cellular-level detection can help us better understand tumors and explore various options for cancer treatment [6, 7]. Object detection frameworks of Convolutional Neural Networks (obj-CNNs) have been proved powerful for locating instances in medical images [e.g., in CT images [8] and colonoscopy images [9]]. The big empirical success of obj-CNNs depends on the availability of a large corpus of fully annotated instances in training images [10]. Different from images of other modalities, we find two kinds of distributions of cells in pathological images, namely embedded and dense distribution, making full annotations of cellular-level instances difficult to

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