Abstract

Drug–drug interactions play a vital role in drug research. However, they may also cause adverse reactions in patients, with serious consequences. Manual detection of drug–drug interactions is time-consuming and expensive, so it is urgent to use computer methods to solve the problem. There are two ways for computers to identify drug interactions: one is to identify known drug interactions, and the other is to predict unknown drug interactions. In this paper, we review the research progress of machine learning in predicting unknown drug interactions. Among these methods, the literature-based method is special because it combines the extraction method of DDI and the prediction method of DDI. We first introduce the common databases, then briefly describe each method, and summarize the advantages and disadvantages of some prediction models. Finally, we discuss the challenges and prospects of machine learning methods in predicting drug interactions. This review aims to provide useful guidance for interested researchers to further promote bioinformatics algorithms to predict DDI.

Highlights

  • Drug–drug interactions (DDI) can occur when two or more drugs are used in combination (Baxter and Preston, 2010)

  • The harm caused by DDI will be greatly reduced if machine learning can be used to efficiently predict DDI

  • In the past 10 years, machine learning has been widely applied in bioinformatics and achieved good results

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Summary

Introduction

Drug–drug interactions (DDI) can occur when two or more drugs are used in combination (Baxter and Preston, 2010). Such interactions may enhance or weaken the efficacy of drugs, cause adverse drug reactions (ADRs) that can even be life-threatening in severe cases (Classen et al, 1997; Agarwal et al, 2020), and cause a drug to be withdrawn from the market (Lazarou et al, 1998). 20% of older adults take at least 10 drugs (Hohl et al, 2001), which greatly increases the risk of ADR. With an increasing number of approved drugs, the possibility for interactions between drugs increases (Khori et al, 2011). Predicting DDI in advance is both urgent and increasingly difficult in clinical practice

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