Abstract

Familial adenomatous polyposis (FAP) is an autosomal dominant disease manifesting as colorectal cancer in middle-aged patients. Mutations of the adenomatous polyposis coli (APC) gene contribute to both FAP and sporadic or familial colorectal carcinogenesis. Here we describe the identification of the causative APC gene defects associated with FAP in a Chinese pedigree. All patients with FAP were diagnosed by their combination of clinical features, family history, colonoscopy, and pathology examinations. Blood samples were collected and genomic DNA was extracted. Mutation analysis of APC was conducted by targeted next-generation sequencing, long-range PCR and Sanger sequencing. A novel mutation in exon 14-15(c.1936-2148 del) and intron 14 of the APC gene was demonstrated in all FAP patients and was absent in unaffected family members. This novel deletion causing FAP in Chinese kindred expands the germline mutation spectrum of the APC gene in the Chinese population.

Highlights

  • Familial adenomatous polyposis (FAP) is an auto­ somal dominant inherited disease characterized by the presence of numerous adenomatous polyps in the colon and rectum

  • In the adenomatous polyposis coli (APC) gene, the coverage depth was up to 200×, with 100% of bases being readable in coding regions

  • According to The Human Gene Mutation Database (HGMD), we found that small and large deletions account for approximately 47.2% of abnormalities in patients with FAP

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Summary

Introduction

Familial adenomatous polyposis (FAP) is an auto­ somal dominant inherited disease characterized by the presence of numerous adenomatous polyps in the colon and rectum. The adenomatous polyposis coli (APC) gene is a tumor-suppressor gene that is implicated in both FAP and sporadic or familial colorectal carcinogenesis. More than three-quarters of the gene consists of coding sequence, with an open reading frame translated into a 2843 amino acid polypeptide. It is involved in diverse cellular processes, including cell migration and adhesion, transcriptional activation, and apoptosis [5, 6]. 94% of APC germline mutations are predicted to produce truncated proteins attributed to nonsense or frameshift mutations (small insertions and deletions), mutations in splice sites, deep intronic deletions, or large genomic rearrangements [7]

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