Abstract

To sample from complex, high-dimensional distributions, one may choose algorithms based on the Hybrid Monte Carlo (HMC) method. HMC-based algorithms generate nonlocal moves alleviating diffusive behavior. Here, I build on an already defined HMC framework, hybrid Monte Carlo on Hilbert spaces (Beskos, et al. Stoch. Proc. Applic. 2011), that provides finite-dimensional approximations of measures , which have density with respect to a Gaussian measure on an infinite-dimensional Hilbert (path) space. In all HMC algorithms, one has some freedom to choose the mass operator. The novel feature of the algorithm described in this article lies in the choice of this operator. This new choice defines a Markov Chain Monte Carlo (MCMC) method that is well defined on the Hilbert space itself. As before, the algorithm described herein uses an enlarged phase space having the target as a marginal, together with a Hamiltonian flow that preserves . In the previous work, the authors explored a method where the phase space was augmented with Brownian bridges. With this new choice, is augmented by Ornstein–Uhlenbeck (OU) bridges. The covariance of Brownian bridges grows with its length, which has negative effects on the acceptance rate in the MCMC method. This contrasts with the covariance of OU bridges, which is independent of the path length. The ingredients of the new algorithm include the definition of the mass operator, the equations for the Hamiltonian flow, the (approximate) numerical integration of the evolution equations, and finally, the Metropolis–Hastings acceptance rule. Taken together, these constitute a robust method for sampling the target distribution in an almost dimension-free manner. The behavior of this novel algorithm is demonstrated by computer experiments for a particle moving in two dimensions, between two free-energy basins separated by an entropic barrier.

Highlights

  • Often, it is important to understand how molecules change conformations

  • The molecular motion here is assumed to be driven by the random thermal motions of the surroundings. This is modeled by Brownian dynamics with the thermal noise supplied by a heat reservoir operating at the fixed temperature e

  • The paper ends with a short discussion of how this new algorithm can be used in calculations employing the path integral molecular dynamic method and, with some concluding remarks

Read more

Summary

A Novel Hybrid Monte Carlo Algorithm for Sampling

The novel feature of the algorithm described in this article lies in the choice of this operator This new choice defines a Markov Chain Monte Carlo (MCMC) method that is well defined on the Hilbert space itself. The ingredients of the new algorithm include the definition of the mass operator, the equations for the Hamiltonian flow, the (approximate) numerical integration of the evolution equations, and the Metropolis–Hastings acceptance rule. Taken together, these constitute a robust method for sampling the target distribution in an almost dimension-free manner.

Introduction
Time Evolution of the Hamiltonian
Splitting
Numerical Experiments
Equilibrium Distribution
Parameter Tuning
Path Length
Deterministic Integration Time
Path Sampling
Continuous-Time Limit
Findings
Discussion
Conclusions
Full Text
Published version (Free)

Talk to us

Join us for a 30 min session where you can share your feedback and ask us any queries you have

Schedule a call