Abstract

A novel defensin antimicrobial peptide gene was identified in Atlantic cod, Gadus morhua. This three exon/two intron defensin gene codes for a peptide precursor consisting of two domains: a signal peptide of 26 amino acids and a mature peptide of 40 residues. The mature cod defensin has six conserved cysteine residues that form 1–5, 2–4 and 3–6 disulphide bridges. This pattern is typical of beta-defensins and this gene was therefore named cod beta-defensin (defb). The tertiary structure of Defb exhibits an α/β fold with one α helix and β1β2β3 sheets. RT-PCR analysis indicated that defb transcripts were present mainly in the swim bladder and peritoneum wall but could also be detected at moderate to low levels in skin, head- and excretory kidneys. In situ hybridisation revealed that defb was specifically expressed by cells located in the swim bladder submucosa and the oocytes. During embryonic development, defb gene transcripts were detectable from the golden eye stage onwards and their expression was restricted to the swim bladder and retina. Defb was differentially expressed in several tissues following antigenic challenge with Vibrio anguillarum, being up-regulated up to 25-fold in head kidney. Recombinant Defb displayed antibacterial activity, with a minimal inhibitory concentration of 0.4–0.8 µM and 25–50 µM against the Gram-(+) bacteria Planococcus citreus and Micrococcus luteus, respectively. In addition, Defb stimulated phagocytic activity of cod head kidney leucocytes in vitro. These findings imply that beta-defensins may play an important role in the innate immune response of Atlantic cod.

Highlights

  • Defensins are important components of the innate arsenal of antimicrobial peptides (AMPs) and proteins (AMPPs) that provide protection against potential pathogens

  • Sequence homology searches against the non-redundant protein database at National Center for Biotechnology Information (NCBI) revealed that cod defensin is most similar to fuDB-1, a defensin-like protein 1 in tiger pufferfish (89%; E-value = 10220), and omDB-1, a beta-defensin 1 from rainbow trout (85%; E-value = 10218)

  • Sequence alignments showed that cod Defb has a conservative motif of common beta-defensins, sharing six conserved cysteines and additional 3 glycine residues that exist close to the positions of C2 and C4 in most species, the only exception being zebrafish Defb2, where the glycine at position 50 is replaced by alanine (Fig. 2)

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Summary

Introduction

Defensins are important components of the innate arsenal of antimicrobial peptides (AMPs) and proteins (AMPPs) that provide protection against potential pathogens. These cationic AMPs with a b-sheet structure stabilised by disulphide bridges are widely distributed across both plant and animal kingdoms [1,2]. Bony fish are the most diverse group of vertebrates and they live in a complex aquatic environment, where they are exposed to water-borne pathogens and deeply affected by abiotic factors These animals secrete a wide range of AMPs and AMPPs as part of their defence mechanism [4,5,6,7]. EST sequences that correspond to 3 beta-defensin isoforms in Atlantic salmon, Salmo salar defb1, -3 and -4 (ssDB-1, -3 and -4) and one betadefensin in Nile tilapia, Oreochromis niloticus defb (onDB) were deposited in the National Center for Biotechnology Information (NCBI) database by Adzhubei et al [15] and Lee et al [16], respectively

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