Abstract

A one-dimensional numerical model that simulates the effects of whitecapping waves was used to investigate the importance of whitecapping waves to vertical mixing at a 3-meter-deep site in Franks Tract in the Sacramento-San Joaquin Delta over an 11-day period. Locally-generated waves of mean period approximately 2 s were generated under strong wind conditions; significant wave heights ranged from 0 to 0.3 m. A surface turbulent kinetic energy flux was used to model whitecapping waves during periods when wind speeds > 5 m s-1 (62% of observations). The surface was modeled as a wind stress log-layer for the remaining 38% of the observations. The model results demonstrated that under moderate wind conditions (5–8 m s-1 at 10 m above water level), and hence moderate wave heights, whitecapping waves provided the dominant source of turbulent kinetic energy to only the top 10% of the water column. Under stronger wind (> 8 m s-1), and hence larger wave conditions, whitecapping waves provided the dominant source of turbulent kinetic energy over a larger portion of the water column; however, this region extended to the bottom half of the water column for only 7% of the observation period. The model results indicated that phytoplankton concentrations close to the bed were unlikely to be affected by the whitecapping of waves, and that the formation of concentration boundary layers due to benthic grazing was unlikely to be disrupted by whitecapping waves. Furthermore, vertical mixing of suspended sediment was unlikely to be affected by whitecapping waves under the conditions experienced during the 11-day experiment. Instead, the bed stress provided by tidal currents was the dominant source of turbulent kinetic energy over the bottom half of the water column for the majority of the 11-day period.

Highlights

  • Shallow water habitat is recognized as central to the productivity of turbid estuarine systems such as the San Francisco Estuary

  • The model results indicated that whitecapping waves were not a large source of turbulent kinetic energy in the bottom half of the water column throughout the 11-day observation period

  • This means that phytoplankton concentrations close to the bed were largely unaffected by whitecapping waves, and that the formation of concentration boundary layers due to benthic grazing was not often disrupted by the whitecapping waves

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Summary

Introduction

Primary production in shallow waters can be limited by benthic grazing by siphonate bivalves (Alpine and Cloern 1992; Cloern 1982) or by reduced light availability due to the resuspension of the fine bottom sediments found in these regions (May et al 2003) Both grazing and turbidity are two of the multiple factors that limit primary productivity to low levels in the San Francisco Estuary relative to other tidal estuaries (Jassby et al 2002). The CALFED Ecosystem Restoration Program plans to create and restore large areas of shallow water habitat for the Sacramento-San Joaquin Delta, Suisun Marsh, and North San Francisco Bay (CALFED 2000) This plan is based on the belief that shallow water habitat is favorable both to endangered native fish species and for primary production. Despite the obvious importance of shallow water habitats to ecological processes in the Sacramento-San Joaquin Delta/San Francisco Estuary system, data on the structure of flows and mixing in shallow waters are extremely limited

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