Abstract

Biomolecules and particularly proteins and DNA exhibit some mysterious features that cannot find satisfactory explanation by quantum mechanical modes of atoms. One of them, known as a Levinthal’s paradox, is the ability to preserve their complex three-dimensional structure in appropriate environments. Another one is that they possess some unknown energy mechanism. The Basic Structures of Matter Supergravitation Unified Theory (BSM-SG) allows uncovering the real physical structures of the elementary particles and their spatial arrangement in atomic nuclei. The resulting physical models of the atoms are characterized by the same interaction energies as the quantum mechanical models, while the structure of the elementary particles influence their spatial arrangement in the nuclei. The resulting atomic models with fully identifiable parameters and angular positions of the quantum orbits permit studying the physical conditions behind the structural and bonding restrictions of the atoms connected in molecules. A new method for a theoretical analysis of biomolecules is proposed. The analysis of a DNA molecule leads to formulation of hypotheses about the energy storage mechanism in DNA and its role in the cell cycle synchronization. This permits shedding a light on the DNA feature known as a C-value paradox. The analysis of a tRNA molecule leads to formulation of a hypothesis about a binary decoding mechanism behind the 20 flavors of the complex aminoacyle-tRNA synthetases - tRNA, known as a paradox.

Highlights

  • Despite the huge number of possible configurations of atoms in proteins, according to the Quantum mechanics (QM), they fold reliably and quickly to their native state

  • They have rich 3D structures defining the spatial arrangements of the electronic orbits, which determine the angular positions of the chemical bonds

  • The 3D structure of the stable elementary particles and atomic nuclei are presented in the Atlas of Atomic Nuclear Structures (ANS) [3], which is an Appendix of the BSM Supergravitation Unified Theory (BSM-SG) monograph [2]

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Summary

Introduction

Despite the huge number of possible configurations of atoms in proteins, according to the Quantum mechanics (QM), they fold reliably and quickly to their native state. The BSM Supergravitation Unified Theory (BSM-SG), based on a new approach [1] is presented in a monograph [2] It unveils a space micro-curvature around the superdense atomic nuclei that distorts significantly the real dimensions of the elementary particles and atomic nuclei. The atomic models derived in the BSM-SG theory [2] show that elementary particles and atomic nuclei are non-spherical, while the atoms posses the same energy levels. They have rich 3D structures defining the spatial arrangements of the electronic orbits, which determine the angular positions of the chemical bonds. The purpose of this article is to suggest a new analytical approach for studying the properties of biomolecules

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