Abstract
Molecular dynamics of PrP 180–193 has allowed us to investigate the stability of the α-helical conformation of the zwitterionic peptide (L 1) and the neutralized (L 2). In water, the helical structure of L 1 is unstable; in L 2, the α-helix breaks up in the middle at Gln186, and the two resulting connected helices are stable. The hydrophobic enviroment decreases the stability of the helical structure of L 1, this effect is more evident for L 2 for which the unfolding of the C-terminus is followed by the formation of an intramolecular hydrogen bond connecting His 187 with Thr 191.
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