Abstract

When protein crystals are submicrometre-sized, X-ray radiation damage precludes conventional diffraction data collection. For crystals that are of the order of 100 nm in size, at best only single-shot diffraction patterns can be collected and rotation data collection has not been possible, irrespective of the diffraction technique used. Here, it is shown that at a very low electron dose (at most 0.1 e(-) Å(-2)), a Medipix2 quantum area detector is sufficiently sensitive to allow the collection of a 30-frame rotation series of 200 keV electron-diffraction data from a single ∼100 nm thick protein crystal. A highly parallel 200 keV electron beam (λ = 0.025 Å) allowed observation of the curvature of the Ewald sphere at low resolution, indicating a combined mosaic spread/beam divergence of at most 0.4°. This result shows that volumes of crystal with low mosaicity can be pinpointed in electron diffraction. It is also shown that strategies and data-analysis software (MOSFLM and SCALA) from X-ray protein crystallography can be used in principle for analysing electron-diffraction data from three-dimensional nanocrystals of proteins.

Highlights

  • Protein crystallography is a major justification for large-scale X-ray facilities such as synchrotrons and free-electron lasers

  • Three-dimensional protein crystals that are smaller than about 0.5 mm are too small for standard X-ray crystallography, XFEL sources are expanding the method towards smaller crystals (Chapman et al, 2011)

  • Recent data demonstrate that useful high-resolution electron diffraction data can be obtained from nanosized three-dimensional protein crystals, where synchrotron X-rays fail (Jiang et al, 2009)

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Summary

Introduction

Protein crystallography is a major justification for large-scale X-ray facilities such as synchrotrons and free-electron lasers. Electrons are less damaging to proteins than X-rays by several orders of magnitude per elastically diffracted quantum (Henderson, 1995). This property of electrons explains the successes of two-dimensional electron crystallography. Recent data demonstrate that useful high-resolution electron diffraction data (up to 2.5 Aresolution) can be obtained from nanosized three-dimensional protein crystals, where synchrotron X-rays fail (Jiang et al, 2009). The Medipix chip only counts 200 keV electrons and, unlike many other detectors, is blind to soft X-rays of lower energy that are produced in great abundance inside any electron microscope In this fashion its noise is almost exclusively determined by the counting statistics of the electrons.

Vitrification
Preparing diffraction patterns for data processing
Collecting diffraction data
Processing the diffraction data with MOSFLM
Discussion and conclusion
Full Text
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