Abstract
Human pluripotent stem cells (hPSCs) have the potential to differentiate into all cell types, a property known as pluripotency. A deeper understanding of how pluripotency is regulated is required to assist in controlling pluripotency and differentiation trajectories experimentally. Mathematical modelling provides a non-invasive tool through which to explore, characterise and replicate the regulation of pluripotency and the consequences on cell fate. Here we use experimental data of the expression of the pluripotency transcription factor OCT4 in a growing hPSC colony to develop and evaluate mathematical models for temporal pluripotency regulation. We consider fractional Brownian motion and the stochastic logistic equation and explore the effects of both additive and multiplicative noise. We illustrate the use of time-dependent carrying capacities and the introduction of Allee effects to the stochastic logistic equation to describe cell differentiation. We conclude both methods adequately capture the decline in OCT4 upon differentiation, but the Allee effect model has the advantage of allowing differentiation to occur stochastically in a sub-set of cells. This mathematical framework for describing intra-cellular OCT4 regulation can be extended to other transcription factors and developed into predictive models.
Highlights
Human pluripotent stem cells, hPSCs, have the ability to self-renew through repeated divisions and to differentiate into a wide range of cell types, a property known as pluripotency
The OCT4 dynamics will be affected by many external factors and the remainder of the PTF network, there are benefits to considering each PTF in isolation as the crucial first step; firstly, this simplifies the model development process, allowing each element to be explored in a systematic way and secondly, the results provide a basis for comparison to the other PTFs (e.g., NANOG and SOX2) from similar experiments
A differentiation agent, bone-morphogenetic protein 4 (BMP4), was added to the cells at 43 hours and results in the reduction of OCT4 expression in the differentiated cells. It is possible for high OCT4 expression to accompany cell differentiation [13]
Summary
HPSCs, have the ability to self-renew through repeated divisions and to differentiate into a wide range of cell types, a property known as pluripotency. The pluripotency of hPSCs is their defining characteristic, central to their applications regenerative medicine [1, 2]. HPSCs exhibit complex behaviour and the in-vitro control of their differentiation trajectories is challenging. Pluripotency is controlled by an inter-regulatory network of pluripotency transciption factors, PTFs, including the genes OCT4, SOX2 and NANOG [3,4,5].
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