Abstract

Recent advances in de novo protein evolution have made it possible to create synthetic proteins from unbiased libraries that fold into stable tertiary structures with predefined functions. However, it is not known whether such proteins will be functional when expressed inside living cells or how a host organism would respond to an encounter with a non-biological protein. Here, we examine the physiology and morphology of Escherichia coli cells engineered to express a synthetic ATP-binding protein evolved entirely from non-biological origins. We show that this man-made protein disrupts the normal energetic balance of the cell by altering the levels of intracellular ATP. This disruption cascades into a series of events that ultimately limit reproductive competency by inhibiting cell division. We now describe a detailed investigation into the synthetic biology of this man-made protein in a living bacterial organism, and the effect that this protein has on normal cell physiology.

Highlights

  • The emerging field of synthetic biology is divided into two broad classes, both of which attempt to understand and harness basic underlying principles of living systems[1]

  • The central focus of the current study was to investigate the synthetic biology of an artificial protein inside the environment of a bacterial host organism

  • We were motivated by the following question: how would a natural system respond to an encounter with an unnatural protein obtained from non-biological origins? Would the expression of a completely man-made protein in a living host organism reveal something new about biological pathways or help explain why certain protein folds are not observed in nature? Because our current understanding of even the most basic of living systems remains limited, investigations such as this have the ability to provide new insights into biological systems

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Summary

Introduction

The emerging field of synthetic biology is divided into two broad classes, both of which attempt to understand and harness basic underlying principles of living systems[1]. Our previous experience in the directed evolution and structure determination of the Family B protein led us to wonder how living cells might respond to an encounter with a man-made protein whose creation never involved heterologous expression in a host organism[26,27,28]. Would such an encounter reveal something new about biological pathways or help explain why certain protein folds are not observed in nature? This would suggest that proteins with noncellular origins might have structures or functions that are incompatible with normal cellular biology, which would significantly limit their use in synthetic biology

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