A Lightweight Deep Learning Framework for Automatic MRI Data Sorting and Artifacts Detection.

Abstract

The purpose of this study is to develop a lightweight and easily deployable deep learning system for fully automated content-based brain MRI sorting and artifacts detection. 22092 MRI volumes from 4076 patients between 2017 and 2021 were involved in this retrospective study. The dataset mainly contains 4 common contrast (T1-weighted (T1w), contrast-enhanced T1-weighted (T1c), T2-weighted (T2w), fluid-attenuated inversion recovery (FLAIR)) in three perspectives (axial, coronal, and sagittal), and magnetic resonance angiography (MRA), as well as three typical artifacts (motion, aliasing, and metal artifacts). In the proposed architecture, a pre-trained EfficientNetB0 with the fully connected layers removed was used as the feature extractor and a multilayer perceptron (MLP) module with four hidden layers was used as the classifier. Precision, recall, F1_Score, accuracy, the number of trainable parameters, and float-point of operations (FLOPs) were calculated to evaluate the performance of the proposed model. The proposed model was also compared with four other existing CNN-based models in terms of classification performance and model size. The overall precision, recall, F1_Score, and accuracy of the proposed model were 0.983, 0.926, 0.950, and 0.991, respectively. The performance of the proposed model was outperformed the other four CNN-based models. The number of trainable parameters and FLOPs were the smallest among the investigated models. Our proposed model can accurately sort head MRI scans and identify artifacts with minimum computational resources and can be used as a tool to support big medical imaging data research and facilitate large-scale database management.