A computational study on conformational geometries, chemical reactivity and inhibitor property of an alkaloid bicuculline with γ-aminobutyric acid (GABA) by DFT

Abstract

Bicuculline – a plant alkaloid is an important molecule of current pharmaceutical interest. It is a competitive antagonist of γ-aminobutyric acid (GABA), particularly of GABAA receptor activation. The antagonistic behavior of BIC with GABAA receptor has been evaluated with the help of quantum chemical calculations. The equilibrium structures of bicuculline conformers have been obtained by geometry optimizations using density functional theory (DFT) calculations at the B3LYP/6-311G(d,p) level of theory. The conformational flexibility of bicuculline has been investigated because of its importance as an apparently specific antagonist of the neurotransmitter GABA. Dipole moment and first hyperpolarizability analysis of BIC have also been performed. For predicting inhibitor properties of BIC, the specific site of interaction of BIC with GABA receptor has been calculated with the help of global and local reactivity descriptors using DFT. Condensed Fukui functions, relative nucleophilicity and electrophilicity indices of BIC and GABA receptor for electrophilic or nucleophilic attack, are computed and compared with the HOMO and LUMO densities, integrated over the Hirshfeld atoms in molecules.