Abstract

The retina contains several ciliated cell types, including the retinal pigment epithelium (RPE) and photoreceptor cells. The photoreceptor cilium is one of the most highly modified sensory cilia in the human body. The outer segment of the photoreceptor is a highly elaborate primary cilium, containing stacks or folds of membrane where the photopigment molecules are located. Perhaps unsurprisingly, defects in cilia often lead to retinal phenotypes, either as part of syndromic conditions involving other organs, or in isolation in the so-called retinal ciliopathies. The study of retinal ciliopathies has been limited by a lack of retinal cell lines. RPE1 retinal pigment epithelial cell line is commonly used in such studies, but the existence of a photoreceptor cell line has largely been neglected in the retinal ciliopathy field. 661W cone photoreceptor cells, derived from mouse, have been widely used as a model for studying macular degeneration, but not described as a model for studying retinal ciliopathies such as retinitis pigmentosa. Here, we characterize the 661W cell line as a model for studying retinal ciliopathies. We fully characterize the expression profile of these cells, using whole transcriptome RNA sequencing, and provide this data on Gene Expression Omnibus for the advantage of the scientific community. We show that these cells express the majority of markers of cone cell origin. Using immunostaining and confocal microscopy, alongside scanning electron microscopy, we show that these cells grow long primary cilia, reminiscent of photoreceptor outer segments, and localize many cilium proteins to the axoneme, membrane and transition zone. We show that siRNA knockdown of cilia genes Ift88 results in loss of cilia, and that this can be assayed by high-throughput screening. We present evidence that the 661W cell line is a useful cell model for studying retinal ciliopathies.

Highlights

  • The sensory primary cilium is an important non-motile cellular organelle, responsible for detecting changes in the extracellular environment and transducing signals to allow the cell to respond

  • To confirm the cone photoreceptor origin of this cell line, and to fully characterize the expression profile of these cells, we performed whole transcriptome RNA sequencing on 661W cells, with and without exposure to serum starvation (GEO Accession: GSE119190; Sequence Read Archive (SRA) Accession: SRP159075) and compared these to expression in hTERT-retinal pigment epithelium (RPE) cells subjected to the same growth conditions (SRA Accession: SRR2895378 and SRR2895380; Supplementary Table 1)

  • Scale bar shows intensity of color relative to TPKM. (B) Integrative Genomics Viewer (IGV) screenshot of OPN1SW genomic location in human genome hg38, with one shared exon with CALU, which accounts for the mapping of reads to OPN1SW in the hTERT-RPE1 cell line. (C) Heat map showing expression level of all cone cell genes expressed in 661W cells, relative to the expression these genes in hTERT-RPE1 cells

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Summary

Introduction

The sensory primary cilium is an important non-motile cellular organelle, responsible for detecting changes in the extracellular environment and transducing signals to allow the cell to respond . There are two types of photoreceptors; rods and cones, which. 661W Photoreceptor Retinal Ciliopathy Model differ in their shape and the photopigment they contain. Both cell types contain an inner segment, where the nuclei and other organelles are located. Extending from the apical surface of this inner segment is the connecting cilium, which contains a proximal region analogous to the transition zone of primary cilia on other cell types, and a distal region which is unique to the photoreceptor connecting cilia (Dharmat et al, 2018). At the end of the connecting cilium is a huge elaboration of stacks of membrane where the photopigment molecules are located; termed the outer segment (Sjöstrand, 1953). Cone outer segments are often described as having folds of membrane continuous with the plasma membrane rather than disks separate from the plasma membrane but this is only true in lower vertebrates (Pearring et al, 2013; May-Simera et al, 2017)

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