Abstract

Experiments have recently been reported that attempt to show that a guanine nucleotide analog called “magic spot” enhances the accuracy of translation by preferentially stimulating the dissipative loss of ternary complexes containing noncognate aminoacyl-tRNA relative to those containing cognate aminoacyl-tRNA. There are two general points of these experiments: (1) conditions that provide a meaningful measure of the effects of magic spot on the accuracy of translation should have been used, and (2) the quantitative scale of these results is incommensurate with the scale of the phenomena to be described. This chapter describes various methods that are intended to provide kinetic data from reconstituted systems that can be used to analyze the characteristics of living bacteria. Thus, the magic spots seem to influence the error rates by at least an order of magnitude both in vivo and in vitro not by the insignificant extent of 30%. The internal milieu of E. coli bacteria growing at 37 ° is very remote from the conditions of conventional systems for in vitro protein synthesis in Tris–magnesium buffer and with elongation rates several orders of magnitude below the 15 sec −1 typical in bacteria.

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