Abstract

Since gastric cancer (GC) is highly heterogeneous in histology and genomics, current treatments harvest efficacies only in limited patients. Sequencing data of previous studies have documented that CLDN18-ARHGAP fusion gene recurrently occurred in GC. However, therapies targeting the CLDN18-ARHGAP fusion gene have not been reported. Next-generation sequencing (NGS) was conducted to identify CLDN18-ARHGAP fusion gene in GC samples. Next, we screened immunogenic neoantigens derived from CLDN18-ARHGAP by CBA, ELISPOT and flow cytometry. Cytotoxicity of neoantigen reactive T (NRT) cells were assessed by killing assays and tumor suppression experiments. Also, we analyzed the tumor immune microenvironment (TIME) of GC with CLDN18-ARHGAP via bioinformatic analysis and in vivo immune analysis. The mechanism behind was explored by western blotting (WB) and fatty acid detection. We detected CLDN18-ARHGAP fusion genes in 9% (8/87) GC patients. To develop immunotherapies targeting these patients, we derived specific neoantigens, and found NRT cells induced by these neoantigens secreted IFN-γ 60 times that of the control group. They also showed stronger antitumor ability to GC cells with CLDN18-ARHGAP in the killing assay and tumor suppression experiments. Additionally, we found increased infiltration of regulatory T cells (Tregs) in GCs with CLDN18-ARHGAP by bioinformatic analysis of public databases and flow cytometry in subcutaneous GC mouse models. Mechanistically, CLDN18-ARHGAP could promote the secretion of fatty acids via activation of PI3K/AKT-mTOR-FAS pathway, thereby enhancing the metabolism and proliferation of Tregs. In mouse models, PI3K inhibitor (PI3Ki) could inverse the suppressive TIME induced by CLDN18-ARHGAP fusion genes and inhibit tumor growth. Our study was the first to identify the immunogenic neoantigens derived from CLDN18-ARHGAP fusion gene and verified the antitumor ability of NRT cells. Also, we revealed the role of CLDN18-ARHGAP fusion gene in promoting a suppressive TIME by facilitating the metabolism and proliferation of Tregs, which could be reversed by PI3Ki. Collectively, we demonstrated that CLDN18-ARHGAP is a potential target for immunotherapies in gastric cancer.

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